Generate synthetic fMRI data by Jeremy Manning

This program is useful for debugging fMRI analyses and models. (nifti, brain, data)

generate_data(meta,X,SNR,TR,sim_hemodynamics,outfile,vararg...

make_nii(varargin)

save_nii(nii, fileprefix, old_RGB)

Neural Data Toolbox (NDTb) by Lukas Maly

Neural Data Toolbox (NDTb) is toolbox developed for neuroscience data processing. (neural data toolbox, ndtb, fmri)

ndtb.m

ndtb_3dviz_gui.m

ndtb_anon_gui.m

Brain Message v 1.0 to write secret messages into fMRI by Vanessa

Write secret messages in fMRI data to be uncovered with independent component analysis (fmri, ica, independent component...)

BrainMessage(message,outname)

2d and 3d brain plots by Jeremy Manning

Quickly and easily create 2d and 3d plots of fMRI data. (fmri, pcolor, 2d)

PATCH_3Darray(varargin)

getTightSubplotHandles(FIG_MARGIN,ROW_MARGIN,COLUMN_MARGIN,...

plot_brain2d(x,meta,nrow,ncol,dim,c,s)

SPM NeuroSynth scraper by Drew Linsley

Scrape activation information from NeuroSynth.org for SPM8 first- or second-level results. (spm, neuroimaging, fmri)

spm_neurosynth(varargin)

Dynamic non-local means (DNLM) for denoising of dynamic medical image sequences by Yaniv

Effective and robust denoising for 4D medical images (e.g. DCE-MRI, fMRI, dynamic PET) (noise, denoising, medical images)

dnlm.m

estimate_noise_dwt(img, Wname)

slices by Jeremy Manning

Slice a tensor (n-d matrix) along the d^th dimension. (repmat, cellfun, arrayfun)

slices(m,d)

create_mosaic.m by Simon Robinson

create_mosiac.m - Create tiled "mosaic" images from volumes (mosaic, mri, nifti)

centre_and_save_nii(image_nii, filename, pixdim)

centre_header(nii_hdr)

load_nii(filename, img_idx, dim5_idx, dim6_idx, dim7_idx, ....

xjView, viewing program for SPM2 and SPM5 by Xu Cui

p-value slider, single-click to get anatomical description (imaging, mri, spm)

xjview(varargin)

MRI 3D interactive viwer by Ibraheem Al-Dhamari

Read and View ANALYZE images format. (analyze, mri, fmri)

MRIViewerB(varargin)

IPN tools for Test-Retest Reliability Analysis by Xi-Nian Zuo

This is one part of my IPN toolbox, aiming at the reliability analysis of neuroimaging meaures. (probability, icc, ccc)

Simple Single-run fMRI Analysis by Temu Gautama

The Bear necessities of a single-run fMRI analysis (medical, fmri, ols)

readanalyze.m by Colin Humphries

Read MRI files in the Analyze format. (data import, data export, fmri)

readanalyze(filename)