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updated 1 month ago

mandymejia/shrinkIt by Amanda Mejia

Perform shrinkage on resting state fMRI connectivity matrices for subject-level parcellation (fmri, statistics, parcellation)

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updated 1 year ago

2d and 3d brain plots by Jeremy Manning

Quickly and easily create 2d and 3d plots of fMRI data. (fmri, pcolor, 2d)

PATCH_3Darray(varargin)

cmu_to_mat(data, meta)

construct_meta(dims)

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updated 1 year ago

SPM NeuroSynth scraper by Drew Linsley

Scrape activation information from NeuroSynth.org for SPM8 first- or second-level results. (spm, neuroimaging, fmri)

spm_mongo_neurosynth(varargin)

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updated 1 year ago

Generate synthetic fMRI data by Jeremy Manning

This program is useful for debugging fMRI analyses and models. (fmri, brain, generate)

generate_data(meta,X,SNR,TR,sim_hemodynamics,outfile,vara...

make_nii(varargin)

save_nii(nii, fileprefix, old_RGB)

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updated 1 year ago

Neural Data Toolbox (NDTb) by Lukas Maly

Neural Data Toolbox (NDTb) is toolbox developed for neuroscience data processing. (neural data toolbox, ndtb, fmri)

ndtb.m

ndtb_3dviz_gui.m

ndtb_anon_gui.m

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updated 1 year ago

Brain Message v 1.0 to write secret messages into fMRI by Vanessa

Write secret messages in fMRI data to be uncovered with independent component analysis (fmri, ica, independent component...)

BrainMessage(message,outname)

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updated 2 years ago

Dynamic non-local means (DNLM) for denoising of dynamic medical image sequences by Yaniv

Effective and robust denoising for 4D medical images (e.g. DCE-MRI, fMRI, dynamic PET) (noise, denoising, medical images)

dnlm.m

estimate_noise_dwt(img, Wname)

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updated almost 3 years ago

slices by Jeremy Manning

Slice a tensor (n-d matrix) along the d^th dimension. (repmat, cellfun, arrayfun)

slices(m,d)

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updated 3 years ago

create_mosaic.m by Simon Robinson

create_mosiac.m - Create tiled "mosaic" images from volumes (mri, fmri, nifti)

centre_and_save_nii(image_nii, filename, pixdim)

centre_header(nii_hdr)

load_nii(filename, img_idx, dim5_idx, dim6_idx, dim7_idx,...

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updated almost 5 years ago

xjView, viewing program for SPM2 and SPM5 by Xu Cui

p-value slider, single-click to get anatomical description (imaging, mri, spm)

xjview(varargin)

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updated almost 5 years ago

MRI 3D interactive viwer by Ibraheem Al-Dhamari

Read and View ANALYZE images format. (mri, fmri, analyze)

MRIViewerB(varargin)

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updated 5 years ago

IPN tools for Test-Retest Reliability Analysis by Xi-Nian Zuo

This is one part of my IPN toolbox, aiming at the reliability analysis of neuroimaging meaures. (probability, icc, ccc)

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updated 10 years ago

Simple Single-run fMRI Analysis by Temu Gautama

The Bear necessities of a single-run fMRI analysis (medical, fmri, ols)

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updated 11 years ago

readanalyze.m by Colin Humphries

Read MRI files in the Analyze format. (data import, data export, fmri)

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