Sequenom2pedfile by Ismael Huertas

It creates the pedfile from the genotyping info generated from Sequenom Mass Array runs (genetics)

Sequenom2pedfile(varargin)

FlowPlot by Hani

Plots FACS data for publication. (flow cytometry, facs, cell biology)

FlowPlot(varargin)

fcsread(filename)

Fisher’s Exact Test by Michael Boedigheimer

Hypergeometric cumulative distribution (left, right and two-tailed) including permutation testing. (hypergeometric, statistics, biotech)

fexact( varargin )

QT Clustering using Euclidean Distance, Jackknife Correlation by Misha Koshelev

Some simple MATLAB files that perform QT clustering (clustering, medicine, genetics)

idx=qtclusteuclid(G,d,D)

idx=qtclustjackknife(G,d,J)

idx=qtclustmod(G,d,D)

Fractal visualisation of genomic sequences by Sam Roberts

Visualise n-mer nucleotide sequences using a fractal visualisation based on a Sierpinski gasket. (pharmaceutical, graphics, biotech)

nmervis(sequence,n,varargin)

nmervisdemo.m

ANOVA and variance components for genetic data by Juan F. Fernandez-Manjarres

Variance components analysis for population genetics data. (anova, population, statistics)

varcomp(x, verbose)

varcomp_nested(x, verbose)