Mean square displacement analysis of particles trajectories by Jean-Yves Tinevez

A MATLAB class for the mean square displacement analysis of particle trajectories, with a tutorial. (measurement, simulation, statistics)

msdanalyzer.m

2D Rotated Gaussian Fit by Steffen B. Petersen

Function will fit a 2D gaussian function. It will also find the rotation angle for the 2D gaussian. (2d gaussian, image processing, surface fitting)

gauss2DRotFit(im,varargin)

Simple cell tracking/contour for extensional flow by Kevin Roth

This script tracks two cells in an extensional flow field while measuring the contours. (image processing, cell tracking, extensional flow)

ExtensionalFlowCellContour.m

ReadAndCropVideo.m

Speckle Size via Autocorrelation by Joel

Outputs the size of speckles in an image that has a **uniform background**. (autocorrelation, autocovariance, speckle)

SpeckleSize( SpeckleRGB )

Color Image Processing Webinar Files by Bruce Tannenbaum

Presentation file and color calibration demo. (makecform, image, image processing)

adjustWP(squareMeans,chartSquares)

calculateError(squares1, squares2)

createCurves(...

Quantitative High-Throughput Gene Expression Imaging by Sam Roberts

Image Processing for Quantitative Gene Expression Analysis of Drosophila Embryo Images (image processing, bioinformatics, gene expression)

Quantitative High-Throughput Gene Expression Imaging

flyproc(im)

dctflyexdemo.m