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updated 17 hours ago

ReadPhilipsScanPhysLog(filename, channels, skipprep) by Paul Groot

ReadPhilipsScanPhysLog.m reads Philips scanphyslog files, which are created by Philips MRI scanners. (mri, philips, physiological)

ReadPhilipsScanPhysLog(filename, channels, skipprep)

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updated 6 days ago

Hibert scan by Said BOUREZG

Hilbert16.m Hilbert.m Hilbertinv16.m Hilbertinv.m lena512.bmp (medical, image processing, matrix)

Hilbert(T)

Hilbert16(T)

Hilbertinv(T)

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updated 11 days ago

LDA for high dimension small sample size data by Bilwaj Gaonkar

Linear discriminant analysis when the data dimensionality is high and sample size is much smaller (medical, image analysis, signal processing)

lda_kernelized.m

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updated 21 days ago

MIT-LCP/wfdb-app-toolbox by Ikaro Silva

A collection of MATLAB/Octave functions for reading and processing physiological time series. (ecg, ekg, eeg)

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updated 24 days ago

Visualization of multi-modal volume segmentation by Pavel Dvorak

Visualize single- or multi-modal 2D or 3D images and corresponding segmentation (image processing, 3d, image)

evalSegmentation(segm,gt,roiMask)

visualize_segmentation(img,varargin)

demo_visualize_segmentation.m

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updated 1 month ago

Pseudo B-Mode Ultrasound Image Simulator by Debdoot Sheet

Simulate pseudo B-mode ultrasonic images with customized tissue echogenicity maps (image processing, signal processing, medical)

fcnPseudoBmodeUltrasoundSimulator.m

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updated 1 month ago

Imagine by Christian Wuerslin

4D/3D image visualization and evaluation GUI. (3d, potw, pick of the week)

Imagine

fLiveWireCalcP.m

fLiveWireGetPath.m

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updated 1 month ago

DSP System Toolbox™ Support Package for ARM® Cortex®-A Processors by MathWorks DSP System Toolbox Team

Optimized C code generation for ARM Cortex-A processor based systems using Ne10 library. (arm, signal processing, communications)

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updated 3 months ago

iSignal 4 by Tom O'Haver

Interactive smoothing, differentiation, peak sharpening and measurement of time-series signals. (signal processing, data import, chemistry)

Processed=ProcessSignal(x,y,DerivativeMode,w,type,ends,Sh...

[pY,PowerSpectrum]=isignal(DataMatrix,xcenter,xrange,sm,s...

isignaldemo2

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updated 3 months ago

Preclinical PKPD modeling by Peter Gennemark

Classes for fundamental PKPD modeling in drug discovery (no support for a NLME modeling). (biotech, simulation, medical)

example_fit_ev_iv()

example_fit_inf()

example_readExcel_PKPD_writePowerPoint()

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updated 4 months ago

MatrixUser v2.2 by Fang Liu

An ImageJ like, Multi-functional, GUI-based Program for Image (Matrix) Processing and Analysis (image processing, image analysis, medical)

About_MU(varargin)

Flag=MU_load_matrix(matrixName, matrix, newWindowOpenFlag)

MU_3D_Render(varargin)

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updated 5 months ago

Graphical User Interface for Solving Ordinary Differential Equations for In-Vitro Infection by Soumya Banerjee

A graphical user interface to solve a set of ordinary differential equations (in-vitro infection) (data import, data export, gui)

odesolver_outline

odecall_eclipse_tcl_jv_local(target,infected1,...

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updated 5 months ago

Wilcoxon rank-sum test and box plots for genes/compounds etc in healthy vs. disease by Soumya Banerjee

Does a Wilcoxon rank-sum test and creates box plot for genes etc in healthy vs. disease individuals (biostatistics, biotech, data import)

wilcoxon_ranksum_boxplot

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updated 5 months ago

An improved computer vision method for white blood cells detection (using differential evolution) by Erik

Automatic white blood cells detector (image processing, computer vision, image analysis)

[costo]=funcDE(pts,imageB)

[salida,rmin,rmax,X0,Y0]=DEllipse(p1,p2,p3,p4,p5)

devec3(fname,VTR,D,XVmin,XVmax,y,NP,itermax,F,CR,strategy...

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updated 5 months ago

t-test and box plots for genes/compounds etc in healthy vs. disease by Soumya Banerjee

Does a t-test and creates box plots for genes/compounds in healthy vs. disease individuals (statistics, biostatistics, biotech)

t_test_boxplot

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updated 5 months ago

healthy_disease_boxplot.zip by Soumya Banerjee

Box plots of measured quantity in healthy vs. disease in two cohorts (statistics, biostatistics, data import)

healthyvsdisease_box_plot_general

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updated 6 months ago

Linear regression for multiple category data with different slopes for each by Soumya Banerjee

The function does OLS and RMA regression on data that is categorized into two different categories (aerospace, biotech, communications)

regress_plot_twocategories_allslope

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updated 7 months ago

Information-based Similarity Toolbox by Albert Yang

Information-based similarity index is an analysis of measuring distance between symbolic sequences (statistical physics, information theory, distance)

binmapping(signal)

checkfiletype(filename)

ibs(wrf1,wrf2)

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updated 8 months ago

MRiLab v1.2 by Fang Liu

A Numerical Simulation Platform for Magnetic Resonance Imaging (MRI) (medical imaging, medical, mri)

ADCRadial.m

AboutMRiLab(varargin)

About_MU(varargin)

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updated 9 months ago

dicomLUT by Jered Wells

DICOMLUT applies an embedded lookup table to a DICOM image (dicom, imaging, lut)

dicomLUT(filename,varargin)

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updated 9 months ago

imoverlay by Matt Smith

Create a color overlay of two images. Allows transparency and thresholding. (overlay, medical, image processing)

imoverlay(B,F,climF,climB,cmap,alpha,haxes)

imoverlay_tool

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updated 9 months ago

DICOM View by Andrew Bazyk

GUI for viewing DICOM image sets (image processing, image, dicom)

DICOM_View

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updated 11 months ago

Tools for NIfTI and ANALYZE image by Jimmy Shen

Load, save, make, reslice, view (and edit) both NIfTI and ANALYZE data on any platform (medical, reslice, isotropic)

affine(old_img, old_M, new_elem_size, verbose, bg, method)

bipolar(M, lo, hi, contrast)

bresenham_line3d(P1, P2, precision)

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updated 11 months ago

DSP System Toolbox Support Package for ARM Cortex-M Processors by MathWorks DSP System Toolbox Team

Support package install file that works with the ARM Cortex-M CMSIS Library (arm, microcontroller, embedded programming)

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updated 11 months ago

Noise-Power Spectrum by Erik Fredenberg

Generate random noise with a specified noise-power spectrum (NPS) and measure the NPS of an image. (physics, medical, image processing)

...

calc_digital_nps(I, n, px, use_window, average_stack)

cart2rad(nps_x, f_x, n, unq)

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updated 1 year ago

Droplet Video Proccessor - code 1 of 3 by Matthew Moynihan

This code processes video of droplet production and does statistics on each droplet made. (video processing, droplets, biotech)

BWSizerA(videoBlock, dim, fStruct)

BlackOut(Image, rect, BLKrect, val)

findFilterNumA(I, rect)

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updated 1 year ago

MSKCC CGDS Cancer Genomics Toolbox by Erik Larsson

Functions for retrieving data from the Cancer Genomics Data Server (CGDS) at MSKCC cBio. (biology, genomics, medical)

cgdstutorial

getcancerstudies(cgdsURL, varargin)

getcaselists(cgdsURL, cancerTypeId, varargin)

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updated 1 year ago

Marching Cubes by Peter Hammer

Use vectorized marching cubes algorithm to compute triangulated mesh of an isosurface from 3D matrix (image processing, medical, modeling)

MarchingCubes(x,y,z,c,iso,colors)

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updated 1 year ago

Empirical orthogonal function (PCA) estimation for EEG time series by DaveA Albers

Empirical orthogonal function (PCA) estimation for EEG time series (signal processing, statistics, data exploration)

distinguishable_colors(n_colors,bg,func)

distinguishable_colors(n_colors,bg,func)

eof_unlimited_time(x, N, T, number_of_measurements_per_bl...

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updated 1 year ago

Glucose/Insulin modeling by DaveA Albers

Modeling of glucose/insulin dynamics (biotech, simulation, medical)

feeding(integration_iterates, I_baseline, time_steps_per_...

feeding(integration_iterates, I_baseline, time_steps_per_...

feeding(integration_iterates, I_baseline, time_steps_per_...

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updated 1 year ago

MIMO-Diophantine solver by davood shaghaghi

This function solve MIMO-Diophantine equation. (control design, optimization, simulation)

mimodioph(A,B,N)

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updated 1 year ago

differential feature by Martin Trapp

Extraction of differential features on 3D Images. (image processing, medical)

differentialFeature( img, features, stepSize )

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updated 1 year ago

DICOM Example Files by Jeff Mather

Example DICOM files containing MR images of the brain. (medical, dicom, dicominfo)

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updated 1 year ago

Simulink Support for Kinect by Takashi Chikamasa

Simulink Support for Kinect is a set of Simulink blocks interfaced with OpenNI and Kinect SDK. (image processing, simulation, simulink)

checkBlockSingleton(model, maskType)

checkDeviceBlock(model, maskType)

checkIMAQBlock(model, blk)

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updated 1 year ago

HybridVel by Pratik Chhatbar

Improved blood velocity measurements with a hybrid image filtering and iterative Radon transform (red blood cells, rbc, radon transform)

hybridvel(inputimg,showimg,saveimg,delx,delt,hi,lineskip,...

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updated 1 year ago

Negative Binomial Regression by Surojit Biswas

NB2 Negative-Binomial regression. (statistics, mathematics, optimization)

nbreg( x, y, varargin )

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updated 1 year ago

eegplot by Ikaro Silva

Uses scattered data points to interpolate pixel values of a head image. (medical, eeg, interpolation)

[z,map]=eegplot(mag,ch,unorm,ch_disp,method,color_res)

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updated 1 year ago

Medical Image Processing Toolbox by Alberto Gomez

Classes and functions for N-dimensional medical image processing, inspired by ITK (image processing, data export, data import)

[img info]=read_mhd(filename)

circle3DMesh(c,r,d,varargin)

coneImage(points_axis, points_side, ref_im)

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updated 1 year ago

Calculation of CT MTF and NPS using the ACR accreditation phantom by Saul

This code enables measurements of CT MTF and NPS from images of an ACR accreditation phantom. (computed tomography, ct, modulation transfer f...)

SliceBrowser(varargin)

mtfcalc.m

npscalc.m

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updated 1 year ago

Four parameters logistic regression - There and back again by Giuseppe Cardillo

Fit data points with a four points logistic regression or interpolate data. (statistics, chemistry, pharmaceutical)

L4Pinv(cf,y)

[cf G]=L4P(x,y,varargin)

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updated 1 year ago

Clarke Error Grid Analysis by Edgar Guevara

Clarke EGA quantifies the accuracy of glucose estimates generated by meters as compared to reference (medical, diabetes mellitus, grid error analysis)

clarke.m

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updated almost 2 years ago

dynplot by Philipp Homan

Draws what is commonly known as 'dynamite plot'. (statistics, medical, bar chart)

dynplot(y,e,varargin)

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updated almost 2 years ago

Compressed Sensing MRI Phantom (v1.1) by David Smith

A realistic phantom for compressed sensing MRI reconstruction. (image processing, mathematics, measurement)

csphantom (n, bandwidth, signalToNoiseRatio, b1scale, img...

example

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updated almost 2 years ago

Nonrigid image registration with fractional differential equations by Nathan Cahill

Solves fractional vector Helmholtz equation in 2D and 3D for use in nonrigid image registration (image processing, medical, image registration)

additiveConvolutionVector(step, lowerBound,...

defaultBoundaries(nPoints)

fractionalHelmholtz2DSliding(varargin)

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updated 2 years ago

MATLAB Tools for Scientist by Asawari Samant

Files from the webinar: MATLAB Tools for Scientists- Introduction to Data Analysis and Visualization (dose response, data import, gui)

Characterization of Dose-Response Behavior

Dose Response Analysis

DoseResponseFit(varargin)

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updated 2 years ago

Triangular mesh conversion from MATLAB to NASTRAN (ASCII) format and vice versa by Sergey Makarov

Four zipped MATLAB scripts supporting export/import of NASTRAN (ASCII) triangular meshes (triangular mesh, data import, modeling)

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updated 2 years ago

Linear regression with statistics for multiple category data by Soumya Banerjee

This function does linear regression with statistics for multiple category data (OLS and RMA) (aerospace, automotive, biotech)

regress_plot_twocategories

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updated 2 years ago

GPU Implementation for GVF Force Field by Quan Wang

We implement the GVF force field on GeForce GPU using CUDA. (image processing, optimization, signal processing)

info =mha_read_header(filename)

mha_read_volume(info)

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updated 2 years ago

Multifractal detrended fluctuation analyses by Espen Ihlen

The multifractal (multifractal, detrended fluctuation..., medical)

MFDFA1(signal,scale,q,m,Fig)

MFDFA2(signal,scale,m,Fig)

Matlabcodes.m

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updated 2 years ago

Five parameters logistic regression - There and back again by Giuseppe Cardillo

Fit data points with a five points logistic regression or interpolate data. (statistics, chemistry, pharmaceutical)

L5Pinv(cf,y)

[cf G]=L5P(x,y,varargin)

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