Segmentation using morphology by Benjamin I

Segmentation of locally darker somewhat circular regions using a morphology based method (segmentation, medical imaging)

[I_segmented, recon]=reconfilt(I, thresh_val, min_rad, max_...

demo.m

imtool3D by Justin Solomon

This is a image slice viewer with built in scroll, contrast, zoom and ROI tools. (image processing, medical imaging, 3d images)

imtool3D

Active geometric shape models by Quan Wang

The active geometric shape model is a novel approach for fitting a geometric shape in images. (shape model, image processing, optimization)

BoundMirrorEnsure(A)

BoundMirrorExpand(A)

BoundMirrorShrink(A)

vPSNR calculation by Claes Lundström

Visualization-aware image fidelity measurements (image fidelity, psnr, image processing)

vPSNR_approx.m

vPSNR_createtf(type)

vPSNR_exact.m

Interactive DICOM 3D Viewer by Eric Johnston

Viewer allows user to look through cross sections of a dicom image set. (dcm, ct, 3d viewer)

Interactive DICOM 3D Viewer

dcm3DViewer

2D and 3D Symmetric Registration using CUDA by Henry Davidge

Vanilla and Symmetric Non-Rigid Registration in 2D and 3D, parallelized using CUDA (registration, image processing, medical imaging)

register2(img1,img2,rho,lambda,maxIter,varargin)

register2Symmetric(img1,img2, rho, lambda, lambda2, maxIter...

register3(img1,img2,rho,lambda,maxIter,varargin)

A Fast Image Segmentation using Delaunay Triangulation (Revisited) by Abbas Cheddad

This is a tuned version of the old post on Delaunay-based image segmentation. (image segmentation, histogram, delaunay triangulatio...)

DSNew.m

[Segmented Clusters]=DSIterate(Segmented,B,C,D)

Ray Tracing Volume Renderer by Scott Robertson

Renders a 3D volume according to a intensity indexed color map and opacity map via ray tracing. (medical imaging, image processing, volume rendering)

ParallelRayGenerator3d(volume,dimx,dimy,raystep)

volumeRenderDemo.m

OrthoView3D by Jered Wells

MATLAB GUI for exploring 3D datasets through a sleek and simple interface (sample dataset included) (3d, data exploration, orthographic)

orthoview3d(varargin)

NRRD Format File Reader by Jeff Mather

Read imagery and metadata from .nrrd medical imaging format files. (file io, image processing, medical imaging)

nrrdread(filename)

Fast Continuous Max-Flow Algorithm to 2D/3D Image Segmentation by Jing Yuan

Fast continuous max-flow algorithm to 2D/3D image segmentation developed in matlab, C and GPU (image processing, image segmentation, convex optimization)

CMF3D_Cut

CMF_Cut

test_CMF

Fast Continuous Max-Flow Algorithm to 2D/3D Multi-Region Image Segmentation by Jing Yuan

It implements the fast continuous max-flow algorithm to 2D/3D multi-region image segmentation. (image processing, mathematics, convex optimization)

CMF3D_ML_Cut

CMF_ML_Cut

test_CMF3D_ML

ct3 - A Simple Mousewheel-based 3D Image Browser for Medical Images by Tripp

A minimalist 3D Medical Image browser. Use the mousewheel to scroll between slices in all 3 planes. (medical imaging, 3d browser, mousewheel)

ct3(im,w)

A Fast Image Segmentation using Delaunay Triangulation by Abbas Cheddad

A fully automated process that does not require initial estimate of number of clusters. (object extraction, cell segmentation, image segmentation)

DS.m

DSeg(varargin)

Retinal Blood Vessel Extraction by Athi

Extracts blood vessels from a retina image using Kirsch's Templates (blood vessel, kirsch, fun)

VesselExtract(inImg, threshold)

Main.m

Texture Feature Extraction - GLDM by Athi

GLDM calculates the Gray level Difference Method Probability Density Functions for the given image. (extraction, feature, mammogram)

GLDM(inImg, d)

SampleUsage.m

Matlab code for my Graduate Thesis by Troy

Numerically solves the diffusion equations as it pertains to medical imaging. (biotech, demo, mathematics)

cnfft(varargin)

cnfft2D(varargin)

cnfftneumann(varargin)

DICOMDIR Parser by Jadrian Miles

Automatically generates a parse tree from a DICOMDIR file, for easy non-interactive processing. (medical, medical imaging, dicom)

copySeriesFromDicomdir(src, patt, dst)

parseDicomdir(fname)

Active Contours: A New Distribution Metric for Image Segmentation by Romeil Sandhu

We present a new distribution metric for image segmentation for active contours. (active contours, segmentation, medical imaging)

Dirac2(x, sigma)

Init_SDF(mask)

Tryphon_NB(I, phi, iter, dt, alpha, flag_approx)

DICOM Viewer by Michael Wunder

Select and preview DICOM header and images. (dicom viewer image, medical imaging, standard)

DICOMViewer(varargin)