Filter noise and interpolate microscopy images in frequency domain by Shalin Mehta

Remove spatial frequencies beyond the optical cutoff and perform physically accurate interpolation. (microscopy, filtering, interpolation)

[out,outscale]=opticalLowpassInterpolation(in,inscale,fcut,...

y=jinc(r)

TestBench_opticalLowpassInterpolation_Airy.m

Vessel branch segmentation by Hiroshi Kawaguchi

Segment the vessel branches from dynamic image of fluorescent microscopy (image processing, gui, microscopy)

VesselBranchSegmentation

[appTime, mask]=VBSvesselMask(vimg)

[map sepTime]=VBSregionMerge(appTimeImg)

Leica image format file loader by Hiroshi Kawaguchi

Read and preview of Leica's image format file. (gui, file format, microscopy)

HKloadLif.m

GUI: Radial Distribution Function by Sourav Chatterjee

Lets the user manually identify centers/dots in an input image, and calculates the RDF (measurement, statistics, image processing)

Rad_Dist_Func(varargin)

[rbin]=rdfcalc(C,xlim,ylim)

[theta]=checkquad(x1,y1,rvec,dim,xlim,ylim)

FRETSCAL by Eric Muller

For the FRET analysis of images of yeast cells labeled with YFP and CFP. (microscopy, yeast, fluorescence resonanc...)

batch

brightpatch

cull_callback

Live Intensity Plot by Peter

Reads images from liveCam, measures intensity in selected region and writes data + movie to file (live intensity plot, imaga acquisition, thin films)

ThinFilms(varargin)

Image Section Generator by Alison Chaiken

Image Section Generator grabs cursor-designated linescans from microscope images (gui, image processing, microscopy)

CheckForExistingFile( OutFileName )

EnforceBounds(InputVector,InputHandles)

ImageSectionGenerator(varargin)