level set for image segmentation by Chunming Li

This Matlab code implements an edge based geometric active contour model without reinitialization. (level set, image segmentation, segmentation)

drlse_edge(phi_0, g, lambda,mu, alfa, epsilon, timestep, it...

demo_1.m

demo_2.m

MorphTool by Brett Shoelson

An interactive environment for morphologically operating on images. (morphology, dilation, image processing)

MorphTool

MorphTool(img,parent)

StrelTool(parentHndl,varName)

Active contours driven by local Gaussian distribution fitting energy by li

This Matlab code implements a segmentation method using local Gaussian distribution fitting energy. (image segmentation, segmentation, level set)

evolution_LGD(Img,u,epsilon,Ksigma,KONE,KI,KI2,mu,nu,lambda...

Demo_LGD_1.m

Demo_LGD_2.m

bmorph - binary morphological transforms by tudor dima

Fast binary erosion and dilation, with even faster iterative calls. (image processing, morphology, erosion)

bmorph(img, B_Coll, ...

Skeleton 2D by Roberto Herrera

A basic example of skeletons in 2D, using maltab. (skeleton, 2d, topology)

skeleton.m

Analysis of Platelet Aggregate Morphology Using 2-D Autocorrelation by Thomas Colace

Analysis of Platelet Aggregate Morphology Using 2-D Autocorrelation (image processing, autocorrelation, platelet aggregates)

[fli,corrwid,corrlen]=fimorphv2(target,n,threshtype)

[level,lnz]=triangle_th(lehisto,num_bins,x)

fiexample.m

clusterImg by Brett Shoelson

Interactively segment RGB image into n user-defined clusters. (morphology, kmeans cluster color ..., segmentation)

clusterImg(imgin,Clusters,varargin)

Motion Detection in a video by Lokesh Peddireddi

motion detection in a video or live objects (motion detection, image process, could you give me you...)

CMorph by Brian Schmidt

Tracking algorithm for cell motion and morphology (biotech, cell tracking, pharmaceutical)

[]=CMorph03(parameterfilename)

Parsampleflowgrav050901b1.m

sampleflowgrav3um60X500fps050901b1.avi

image segmentation using iterative watersheding plus ridge detection by Li CHEN

image segmentation for grid-pattern (detection, image segmentation, morphology)

DepthMeature(L, I)

DrawEllipse(cur_img, regs, colortable, colortable1)

MarkPseudoBlob( L, bwridge, NUMTHRESH, MERGETHRESH )

Find point position in 2D polygon by Boguslaw Obara

Calculates point position in 2D polygon: inside, outside, is a vertex and on the edge. (image processing, image, 2d polygon)

BOPointInPolygon( P, q )

BOPointInPolygon_TEST.m

Skeleton end and triple points by Boguslaw Obara

Detects the end and triple points of a skeleton (skeleton, hit or miss, morphology)

BOHitOrMiss ( im, method )

BOHitOrMiss_TEST.m

ISLANDS by Matt Fig

Finds all "islands" which are 4-connected components in a matrix. (morphology, segmentation, 4connected)

islands(a)

islandsmx() % Help file for mex version.

find_components by Tim Davis

finds the connected components of an image (morphology, segmentation, image)

find_components (A,sorted)

find_components_example(example)

largest_component (A)

GrowCut Image Segmentation by Shawn Lankton

GrowCut Image Segmentation for binary segmentation, implemented in Matlab/C++ with mex (growcut, graph cut, morphology)

growcut(img, labels)

growcut_test.m

HK segmentation by Alireza Bossaghzadeh

Calculate mean and gaussian curvature. (mean curvature gaussi..., segmentation, morphology)

[H K]=HK(Z)

Removing blob(s) from a binary image by Mathijs van Vulpen

'bwremove' removes the blob(s) in the seed image that is overlapped by the blob(s) in the mask image (morphology, segmentation, remove blob binary im...)

bwremove(seed, mask)

Hysteresis Thresholding by Massimo Fierro

C implementation of Hysteresis Thresholding (hysteresis threshold, c implementation, morphology)

Tri-hedral Junctions using lookup table by Shripad Kondra

finds the trihedral junctions from the binary edge map (morphology, segmentation, trihedral junctions)

find_trihedral_junctions(edgemap)

tree labelling by Alireza Fasih

simple and new algorithm for labellings of 3 level trees (branch, tree, segmentation)

anaskel(wsk);

main.m

Active Contour Segmentation by Shawn Lankton

Finds foreground and background regions using level sets and active contours. (active contour, level sets, morphology)

region_seg(I,init_mask,max_its,alpha,display)

region_seg_demo.m

edge detection by kongkiat Doksuntia

edge detection (morphology, segmentation, edge detection)

M03_Edge_Detection.m

Region Growing by Dirk-Jan Kroon

Segmentation by growing a region from seed point using intensity mean measure (region growing region..., simple and effective ..., segmentation)

J=regiongrowing(I,x,y,reg_maxdist)

Image Tiling by Yasser Arafat

can be used for CBIR (morphology, segmentation, image tiling image bl...)

ImgYContainer=YTiler(NHBlocks,NVBlocks,typeOfImages)

YDemo__Tiler.m

skeleton in 3D by Gianni Schena

Distance transform oriented code for 3d skeletonization. (3d, skeleton, oriented code)

fspecial3(type,siz)

skel3d_Tp.m

Better Skeletonization by Nicholas Howe

Provides an alternative to the image toolbox skeletonization implemented in bwmorph. (skeletonization, alternative, morphology)

anaskel(wsk);

demo.m

skeleton.m

Retaining the largest blob in an image by Ani

'bwlargestblob' reads in a 2-d binary image and outputs a binary image, retaining only the largest b (morphology, segmentation, largest blob)

bwlargestblob(im,connectivity)

Path Tracing, Measurements, Fragmentation for Doubly-Connected Spot by Eduard Polityko

Path tracing for 1- and 2-connected pixel sets. Elimination of intersection points and dead ends. (path tracing, 2connected, morphology)

PATH TRACING, MEASUREMENTS, FRAGMENTATION FOR DOUBLY-CONNEC...

I=cleananddiv(J)

[A,varargout]=rzrzc(alfa,varargin)

Image Segmentation via topological derivative by Ignacio Larrabide

Segment an image using the topological derivative (continuous and discrete algorithms). (topological derivativ..., morphology, image segmentation)

Segmentation_Continuum_TD( imIn, cls, bt, perc, kIni, optCl...

Segmentation_Discrete_TD( imIn, rho, cls, perc, clsOpt, Tol...

example.m

Path Tracing, Measuarement, Fragmentation by Eduard Polityko

Get borders of multiple spot image as numeric array, various measurements, fragmentation, extraction (morphology, segmentation, path tracing)

PATH TRACING, MEASUREMENTS, FRAGMENTATION

I=cleanrays(J);

[X,Y,varargout]=digisn(alfa,varargin);

Face & eye detection by Mustafa UCAK

Simple face and eye detection (detection, eye, eye detection)

[face_a,skin_region]=face(I);

findeye(NumberOfFrames,prefix,fileformat,threshold);

nframe=eyematch(frame,thresh,template);

Edge Detection and Segmentation by Madhu S. Nair

Edge Detection Prewitt Roberts Log Canny Sobel Straight Line Hough Transform quadree region growing (edge detection segmen..., segmentation, morphology)

edgedetect(x)

houghtr(x)

quadtree(x)

Image segmentation & Extraction by Jeny Rajan

This program segments and extracts objects from an image. (image, segmentation, object extraction)

seg.m

FloodFill3D by F Dinath

This program flood fills a 3D region in a binary matrix (morphology, segmentation, flood fill floodfill ...)

FloodFill3D(A, slice);

FloodFill3Dexample.m

Open Nanoscope 3 AFM images by Enrique Escobedo

Reads AFM data from Nanoscope 3 software (morphology, segmentation, afm)

extract_num(str)

openNano(file_name)

Active Contour Toolbox by Eric Debreuve

This toolbox provides some functions to segment an image or a video using active contours (segmentation, morphology, segmentation active d...)

ac_area(acontour)

ac_clipping(acontour, framesize)

ac_deformation(acontour, deformation, framesize, resolution...

BW Noise Reduction by Javad Razjouyan

Reduce noise in Binary Image by counting number of conected pixels (noise, bw, segmentation)

bwNoiseReduction(IBW,n,NUM)

interactive binarization by thresholding by Angel Garcimartín

interactive thresholding to obtain binary images (image analysis, thresholding, morphology)

binar(varargin)

EM image segmentation by Jose Vicente Manjon-Herrera

Apllication of EM algorithm to segment a grey scale image on diferent classes (algorithm, em, em segmentation)

[mask,mu,v,p]=EMSeg(ima,k)

Automatic Thresholding by Hidetoshi Nishimura

Function to change an intensity image to a segmented image. (automatic threshold, binarization, segmentation)

im2bw_ent(IM)

COM Automatic Thresholding (REVISED) by Hidetoshi Nishimura

Automatic Thresholding by detecting the center of mass of histgram (automatic thresholdin..., morphology, image segmentation)

im2bw_com(IM)

Morphological Character Recognition by Jahanzeb Rajput

INTREC Performs morphological character recognition (character, morphological, character recognition)

intrec(Z)

A GUI about medicinal images segmentation with FCM or KFCM(Kernelled FCM) by Genial Rong

Just as a GUI example (fcm, segmentation, gui)

FCMClust.m

KFCMClust.m

MainGUI.m

kmeans image segmentation by Jose Vicente Manjon-Herrera

Application of kmeans clustering algorithm to segment a grey scale image on diferent classes. (kmeans segmentation, cell segmentation, clustering)

[mu,mask]=kmeans(ima,k)

Vertical/horizontal Features Selection in Binary Images by Asad Rasool

Vertical/horizontal features selection in binary images. (morphology, segmentation, image)

vert( a )

AUTOMATIC THRESHOLDING by Ivan Dario Castano Perez

This function implementos the Gaussian Serach Algorithm for thresholding. (automatic thresholdin..., algorithm, morphology)

umbral=gausiana(COUNTS,v,p);

Histogram Gaussian Smooth by Ivan Dario Castano Perez

This function implements the gaussian smooth of any size for an histogram ... (gaussian, histogram, morphology)

suavgausiano(COUNTS,w);

Foreground segmentation by Nicholas Howe

Uses graph cuts to segment foreground objects from a static background in video. (background segmentati..., foreground segmentati..., segmentation)

extractForeground(video,frameSkip,dataRange,minSigmaLevel,s...

extractForeground(video,frameSkip,dataRange,minSigmaLevel,s...

graphlabel(C,P)

Dim Detection in Images by Ananth Nag Sastry Ganti

Detects any foriegn bodies in the images taken by CMOS Image sensor. (morphology, segmentation, gaussian filtering)

ed2(im)

Automatic Thresholding by Gauthier Fleutot

How to find a good default threshold value? (morphology, segmentation, histogram isodata thr...)

isodata(count, intensity)