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updated 2 years ago

MotifCatcher by Phillip Seitzer

a MATLAB GUI platform for determination and evaluation of biologically significant motifs (motif, positionspecific scor..., scoring matrix)

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MC_CompareOccurrenceAndLocalization(MotifMap)

MC_GetFPDir

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updated 3 years ago

Motif Finding by Michael Chan

Illustrates Combinatorial and Viterbi-akin motif finding. (bioinformatics, probabilistic, combinatorics)

PWM( alignmentSetMatrix )

computeNewPWM_GivenSeqBasedOnPWM (alignmentSetMatrix, mot...

computeProbabilityOfSubsequence(sequenceToBeChecked, prob...

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updated almost 4 years ago

Gibbs Motif Sampler by Brad Ridder

Finds motifs and the optimum width via Gibbs sampling. No toolboxes required. (gibbs, sampling, markov)

gibbsmotifsampler(seqArray,motifVector,alphabet,Options)

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