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updated 1 month ago

DICOM to NIfTI converter by Xiangrui Li

dicm2nii.m converts dicom files into nifti files. (dicom, nifti, siemens)

dicm2nii(src, dataFolder, varargin)

dicm_dict(vendor, flds)

dicm_hdr(fname, dict, iFrames)

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updated 2 months ago

3D NIfTI Data Viewer by Yi Sui

3D NIfTI data viewer based on the work of Jimmy Shen (#8797) (nii, nifti)

affine(old_img, old_M, new_elem_size, verbose, bg, method)

bipolar(M, lo, hi, contrast)

bresenham_line3d(P1, P2, precision)

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updated 5 months ago

MatrixUser v2.1.1 by Fang Liu

A Multi-functional, GUI-based Program for Image (Matrix) Processing and Analysis (image processing, image analysis, medical)

About_MU(varargin)

Flag=MU_load_matrix(matrixName, matrix, newWindowOpenFlag)

MU_3D_Render(varargin)

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updated 7 months ago

Siemens DICOM sort and convert to NIfTI by Simon Robinson

Converts Siemens MRI DICOM data into NIfTI format, and/or anonymises and sorts into scan directories (dicom, nifti, mri)

centre_header(nii_hdr)

convert_2dto3d_func2(obj, eventdata, interleave_sort, rea...

convert_to_analyze_func(data)

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updated 7 months ago

Intensity normalization of Brain volume by Alessandro Crimi

Intensity normalization of Brain volume given a reference volume (nifti, brain, intensity normalizati...)

emgm(X, init, prob_prior)

get_nii_frame(fileprefix)

hellier_hist_normalization_gmm( file_name_template, file_...

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updated 7 months ago

Tools for NIfTI and ANALYZE image by Jimmy Shen

Load, save, make, reslice, view (and edit) both NIfTI and ANALYZE data on any platform (medical, reslice, isotropic)

affine(old_img, old_M, new_elem_size, verbose, bg, method)

bipolar(M, lo, hi, contrast)

bresenham_line3d(P1, P2, precision)

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updated 1 year ago

Semi Automatic Medical Image 3D segmentation by Brad Moffat

This performs matlab clustering fuzzy cmeans or kmeans on a freehand roi. (image processing, dicom, nii)

[hdist,xydata2,dist,cdp]=auto_rano_roi(varargin)

sami_3d_clust(data,nclust,varargin)

sami_3d_clust_m(data,nclust,varargin)

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updated 1 year ago

Generate synthetic fMRI data by Jeremy Manning

This program is useful for debugging fMRI analyses and models. (fmri, brain, generate)

generate_data(meta,X,SNR,TR,sim_hemodynamics,outfile,vara...

make_nii(varargin)

save_nii(nii, fileprefix, old_RGB)

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updated 1 year ago

DICOM to NIfTI converter by Guilherme Coco Beltramini

Simple DICOM to NIfTI converter. Gradient table for DTI files is also created. (dicom, nifti)

dicom2nifti(dcmfile,elim_grad,elim_slc)

dti_grad_table(dcmhdr,Ngrad,corr_rot,out_folder)

make_nii(varargin)

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updated 1 year ago

Brain Message v 1.0 to write secret messages into fMRI by Vanessa

Write secret messages in fMRI data to be uncovered with independent component analysis (fmri, ica, independent component...)

BrainMessage(message,outname)

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updated 2 years ago

Function for Viewing MRI Slices by Aras

Allows the viewing of slices of MRI data in the NIFTI format. (nifti, mri, slice)

splic(x,y,z,t)

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updated 3 years ago

create_mosaic.m by Simon Robinson

create_mosiac.m - Create tiled "mosaic" images from volumes (mri, fmri, nifti)

centre_and_save_nii(image_nii, filename, pixdim)

centre_header(nii_hdr)

load_nii(filename, img_idx, dim5_idx, dim6_idx, dim7_idx,...

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updated 3 years ago

Read Medical Data 3D by Dirk-Jan Kroon

GUI to open most Medical file-formats: Dicom, V3D, ISI, NifTI, Analyze and other formats (dicom, dcm, v3d)

ErrorData3D(varargin)

InfoData3D(varargin)

ReadData3D(varargin)

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updated 4 years ago

xjView, viewing program for SPM2 and SPM5 by Xu Cui

p-value slider, single-click to get anatomical description (imaging, mri, spm)

xjview(varargin)

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