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updated 9 days ago

DICOM to NIfTI converter by Xiangrui Li

dicm2nii.m converts dicom files into nifti files. (dicom, nifti, siemens)

dicm2nii(src, dataFolder, varargin)

dicm_dict(vendor, flds)

dicm_hdr(fname, dict, iFrames)

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updated 4 months ago

MatrixUser v2.2 by Fang Liu

An ImageJ like, Multi-functional, GUI-based Program for Image (Matrix) Processing and Analysis (image processing, image analysis, medical)

About_MU(varargin)

Flag=MU_load_matrix(matrixName, matrix, newWindowOpenFlag)

MU_3D_Render(varargin)

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updated 6 months ago

3D NIfTI Data Viewer by Yi Sui

3D NIfTI data viewer based on the work of Jimmy Shen (#8797) (nii, nifti)

affine(old_img, old_M, new_elem_size, verbose, bg, method)

bipolar(M, lo, hi, contrast)

bresenham_line3d(P1, P2, precision)

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updated 11 months ago

Siemens DICOM sort and convert to NIfTI by Simon Robinson

Converts Siemens MRI DICOM data into NIfTI format, and/or anonymises and sorts into scan directories (dicom, nifti, mri)

centre_header(nii_hdr)

convert_2dto3d_func2(obj, eventdata, interleave_sort, rea...

convert_to_analyze_func(data)

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updated 11 months ago

Intensity normalization of Brain volume by Alessandro Crimi

Intensity normalization of Brain volume given a reference volume (nifti, brain, intensity normalizati...)

emgm(X, init, prob_prior)

get_nii_frame(fileprefix)

hellier_hist_normalization_gmm( file_name_template, file_...

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updated 11 months ago

Tools for NIfTI and ANALYZE image by Jimmy Shen

Load, save, make, reslice, view (and edit) both NIfTI and ANALYZE data on any platform (medical, reslice, isotropic)

affine(old_img, old_M, new_elem_size, verbose, bg, method)

bipolar(M, lo, hi, contrast)

bresenham_line3d(P1, P2, precision)

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updated 1 year ago

Semi Automatic Medical Image 3D segmentation by Brad Moffat

This performs matlab clustering fuzzy cmeans or kmeans on a freehand roi. (image processing, dicom, nii)

[hdist,xydata2,dist,cdp]=auto_rano_roi(varargin)

sami_3d_clust(data,nclust,varargin)

sami_3d_clust_m(data,nclust,varargin)

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updated 1 year ago

Generate synthetic fMRI data by Jeremy Manning

This program is useful for debugging fMRI analyses and models. (fmri, brain, generate)

generate_data(meta,X,SNR,TR,sim_hemodynamics,outfile,vara...

make_nii(varargin)

save_nii(nii, fileprefix, old_RGB)

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updated 1 year ago

DICOM to NIfTI converter by Guilherme Coco Beltramini

Simple DICOM to NIfTI converter. Gradient table for DTI files is also created. (dicom, nifti)

dicom2nifti(dcmfile,elim_grad,elim_slc)

dti_grad_table(dcmhdr,Ngrad,corr_rot,out_folder)

make_nii(varargin)

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updated 1 year ago

Brain Message v 1.0 to write secret messages into fMRI by Vanessa

Write secret messages in fMRI data to be uncovered with independent component analysis (fmri, ica, independent component...)

BrainMessage(message,outname)

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updated almost 3 years ago

Function for Viewing MRI Slices by Aras

Allows the viewing of slices of MRI data in the NIFTI format. (nifti, mri, slice)

splic(x,y,z,t)

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updated 3 years ago

create_mosaic.m by Simon Robinson

create_mosiac.m - Create tiled "mosaic" images from volumes (mri, fmri, nifti)

centre_and_save_nii(image_nii, filename, pixdim)

centre_header(nii_hdr)

load_nii(filename, img_idx, dim5_idx, dim6_idx, dim7_idx,...

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updated almost 4 years ago

Read Medical Data 3D by Dirk-Jan Kroon

GUI to open most Medical file-formats: Dicom, V3D, ISI, NifTI, Analyze and other formats (dicom, dcm, v3d)

ErrorData3D(varargin)

InfoData3D(varargin)

ReadData3D(varargin)

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updated almost 5 years ago

xjView, viewing program for SPM2 and SPM5 by Xu Cui

p-value slider, single-click to get anatomical description (imaging, mri, spm)

xjview(varargin)

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