Brain Message v 1.0 to write secret messages into fMRI by Vanessa

Write secret messages in fMRI data to be uncovered with independent component analysis (fmri, ica, independent component...)

BrainMessage(message,outname)

Generate synthetic fMRI data by Jeremy Manning

This program is useful for debugging fMRI analyses and models. (nifti, brain, data)

generate_data(meta,X,SNR,TR,sim_hemodynamics,outfile,vararg...

make_nii(varargin)

save_nii(nii, fileprefix, old_RGB)

Tools for NIfTI and ANALYZE image by Jimmy Shen

Load, save, make, reslice, view (and edit) both NIfTI and ANALYZE data on any platform (analyze, niftl, nifti)

affine(old_img, old_M, new_elem_size, verbose, bg, method)

bipolar(M, lo, hi, contrast)

bresenham_line3d(P1, P2, precision)

Intensity normalization of Brain volume by Alessandro Crimi

Intensity normalization of Brain volume given a reference volume (nifti, brain, intensity normalizati...)

emgm(X, init, prob_prior)

get_nii_frame(fileprefix)

hellier_hist_normalization_gmm( file_name_template, file_na...

Function for Viewing MRI Slices by Aras

Allows the viewing of slices of MRI data in the NIFTI format. (nifti, mri, slice)

splic(x,y,z,t)

create_mosaic.m by Simon Robinson

create_mosiac.m - Create tiled "mosaic" images from volumes (mosaic, mri, nifti)

centre_and_save_nii(image_nii, filename, pixdim)

centre_header(nii_hdr)

load_nii(filename, img_idx, dim5_idx, dim6_idx, dim7_idx, ....

Siemens DICOM sort and convert to NIfTI by Simon Robinson

Converts Siemens MRI DICOM data into NIfTI format, and/or anonymises and sorts into scan directories (dicom, siemens, mri)

centre_header(nii_hdr)

convert_2dto3d_func2(obj, eventdata, interleave_sort, readf...

convert_to_analyze_func(data)

Read Medical Data 3D by Dirk-Jan Kroon

GUI to open most Medical file-formats: Dicom, V3D, ISI, NifTI, Analyze and other formats (dicom, export, mhd)

ErrorData3D(varargin)

InfoData3D(varargin)

ReadData3D(varargin)

xjView, viewing program for SPM2 and SPM5 by Xu Cui

p-value slider, single-click to get anatomical description (imaging, mri, spm)

xjview(varargin)