MPCC Solution of Genetic Regulatory Circuit Design Problems by James Allison

Demonstration of a novel MPCC-based technique for solving gene circuit design problems. (optimization, simulation, biotech)

MPCC_con()

constraint(xd,p)

master_genecircuit()

Navigating curves by sri

Developing Scenario Analysis Applications using Interest Rate Curve Objects in MATLAB (finance, interest rate curves, simulation)

getNewNelsonsiegelParams(oldParams, t)

getNewNelsonsiegelParamsN(oldParams, t,n)

getNewZeroRates( NSModel,params,PlottingDates )

Multicore - Parallel processing on multiple cores by Markus Buehren

This package provides parallel processing on multiple cores/machines. (distributed computing, parallel processing, parallel computing)

chompsep(str)

concatpath(varargin)

deletewithsemaphores(fileList)

Parallel Computing test (Ordinary Differential Equation) by Bogumila & Zbigniew MROZEK

Describes how to use Parallel Computing Toolbox to speed up computing with multi core computer. (multicore, dualcore, parallel computing)

m9911

m9912

ode1000.m

Worker Object Wrapper by Edric Ellis

Simplifies managing resources such as large data within PARFOR loops and SPMD blocks (parallel computing, parfor, spmd)

WorkerObjWrapper

CUDA Convolution filter by Mario Tuerschmann

Convolution of an arbitrary 1D complex signal with an arbitrary filter kernel (cuda, cluster, hpc)

CudaConvolution( input_args )

Approaches to implementing Monte Carlo methods in MATLAB by sri

Code for the article in the September 2011 article http://www.wilmott.com/magazine.cfm (monte carlo, parallel computing, wilmott)

PriceArithmeticAsianOption(S0,X,r,T,sigma,NSteps,NPaths)

PriceArithmeticAsianOptionFin(S0,X,r,T,sigma,NSteps,NPaths)

PriceArithmeticAsianOptionPCT(S0,X,r,T,sigma,NSteps,NPaths)

semaphore by Joshua Dillon

This mex file provides an interface with the POSIX semaphore functionality. (distributed computing, hpc, interprocess communic...)

semaphore.m

sharedmatrix by Joshua Dillon

SHAREDMATRIX Allows any Matlab object to be shared between Matlab sessions (w/o using file I/O). (distributed computing, large data, shared memory)

S=whosshared(HEXOUTPUT)

SharedMemory_install

test

parsave by Philip

This function allows you to save variables inside a parfor loop. (parfor, save, data export)

parsave(fname,data)

Large Data in MATLAB: A Seismic Data Processing Case Study by Stuart Kozola

These are the files used in the webinar on Feb. 23, 2011. (seismic, segy, large data)

Large Data in MATLAB: A Case Study in Seismic Data Processi...

Seismic Migration Example - Fault Model

fm2d(v,model,nz,dz,nx,dx,nt,dt)

Accelerating Finite Element Analysis (FEA) in MATLAB by Vaishali Shrivastava

Accelerate computationally intensive part of FEA by using Parallel computing. (parallel computing to..., fem, parallel computing)

computeMForcesfromV(nodes, edges, triangles, potential, geo...

connectivity(p,t)

copyright

jPar - parallelizing Matlab calculations on multicores and in clusters without file communication by Andrzej Karbowski

jPar is a simple parallelizing tool compatible with the old Paralize package, using Java mechanisms. (clusters, distributed computing, distributed processin...)

[varargout]=jpar_client(funstr,varargin)

convj2matlab(objin)

convm2java(objin)

Speeding Up Optimization Problems with Parallel Computing by Stuart Kozola

Files from the webinar: Speeding up optimization problems with parallel computing (aerospace, automotive, demo)

Electron Problem Optimization

First Order Reliability Method using a Simulink Flutter Mod...

computebestportfolioPCT(expRet,expCov,portSize,targetRet)

taskMap: show your distributed computing tasks by Ben Tordoff

charts completed and running tasks for a distributed computing job for each worker (parallel computing to..., parallel computing, distributed)

taskMap( job, varargin )

Parallel Computing with Simulink: Model Reference Build by Seth Popinchalk

These files accompany my blog post of the same name. (simulink, parallel computing, pct)

Parallel Computing with Simulink, Model Reference Parallel ...

cleanUpMref

bot_model001

Enhancing e-Infrastructures with Advanced Technical Computing: Parallel MATLAB® on the Grid by Arjav Chakravarti

code exercises for M11 tutorial at SC08 (distributed processin..., parallel computing, sc08)

Exercise1_SimBio_parfor

Exercise3_SimBio_jobs

Exercise5_batch_parfor

Distributed parallel simulations with Simulink(R) and other tools by Roger Aarenstrup

Parallel and co-simulations with Simulink(R), integration with simServer (distributed parallel ..., parallel computing, distributed processin...)

slblocks

controller_params.m

controller_params.m

Parallelizing Matlab on Large Distributed Computing Clusters by Tiberiu

A solution to running large amounts of Matlab code in parallel on large computational pools. (optimization, economics, parallel computing)

Simulation for Cellular Neural Networks (CNN) by Hoang Manh Thang

The simulation for Cellular Neural Networks (CNN) is built in Simulink/Matlab. (cellular neural netwo..., cnn, paradigm)

Example1.m

Example2.m

Cellmodel

Visual Timing Report for Distributed Tasks by Jos Martin

Create a visual representation of when and where each task in a distributed computing job executes. (distributed processin..., parallel computing, distributed)

plottasks( jmName, jobName )

Cluster setup scripts by Jos Martin

Shell scripts to easily control a MATLAB distributing computing cluster (distributed processin..., parallel computing, distributed computing)

DCT Viewer by Elwin Chan

This utility allows you to monitor the activity on your cluster when using the Distributed Computing (distributed processin..., parallel computing, dct viewer)

dct_viewer(varargin)

Expectation Maximization of Gaussian Mixture Models via CUDA by Andrew Harp

CUDA enabled parallel EM for Gaussian Mixture Models, providing over 100x performance increases. (expectation maximizat..., probability, gmm)

errorellipse(mu,sigma,stdev,n)

gmm_test(num_clusts, num_dims, num_samps, num_steps, num_tr...

nvmex(varargin)

GPU from MATLAB(R) example by The GP-you Group

Simple example showing how to access the GPU from MATLAB (gpu, cuda, parallel computing)

Simple_GPGPU_Matlab.m

runme.m

Improving Optimization performance with Parallel Computing by Linda Webb

Parallel computing can accelerate the solution of computationally expensive optimization problems (whitepaper, article, paper)

Enhancing Multicore System Performance Using Parallel Computing with MATLAB by Linda Webb

Enabling you to select the programming paradigm to work well in a multicore system (whitepaper, article, parallel computing)

GUI for Cellular Neural Network by Alireza Fasih

GUI for Cellular Neural Netwrok. (filtering, cnn, cellular neural netwo...)

cnnderiv(t,x)

gui_test(varargin)

pwlsig(x)

CCS Toolbox by Marc Molinari

Interfaces Matlab to the Microsoft Compute Cluster Server via XML (distributed processin..., parallel computing, microsoft compute clu...)

ccs_create_submission_file( ccsjob, filename )

ccsjob()

ccstask()

qsubfunc by Arnaud Delorme

Launching MATLAB processes from MATLAB under a Unix cluster grid. (distributed processin..., parallel computing, parallel)

qsf( funcname, funcarg, funcout, varargin )

paralize (v2006a) by Thomas Abrahamsson

This function is useful for those with a heterogeneous network of computers with a common filesys. (distributed processin..., parallel computing, cluster)

[varargout]=paralize(funstr,varargin)

serve(id,direc)

Using Grid MP with MatLab. by alex lynch

How to use MatLab with Grid MP from United Devices. Required files and documentation. (distributed processin..., parallel computing, grid mp distributed c...)

listJobs and listTasks by Phil Wade

These two functions produce tabular summaries of the jobs and tasks in your distributed computing .. (distributed processin..., parallel computing, summary jobs tasks)

listJobs(jm)

listTasks(j)

DCTOOL by Tim Farajian

Graphical interface useful for displaying the status of a distributed computing network. (distributed processin..., parallel computing, distributed)

dctool(varargin)

modification of getmyip.m by Kaisheng Yao

modify getmyip.m (distributed processin..., parallel computing, getmyipm)

ipa=getmyip

Using virtual processors for SPMD parallel programs by Gianluca Argentini

Performances of parallel MATLAB computations by splitted physical processors. (whitepaper, article, paper)

MATLAB Parallelization ToolkIt 1.20 by Einar Heiberg

Toolkit for easy parallelization of matlab code, for instance using parallelized for loops. (for, parallel, distributed processin...)

Beolab Toolbox for v6.5 by Thomas Abrahamsson

Parallel Matlab execution in trusted networks such as Beowulfs (distributed processin..., parallel computing, parallel)

SetPriority by Shen Chunhua

Set process priority of MATLAB. (distributed processin..., parallel computing, process priority)

SetPriority(P)

DistributePP by Dr. Michael D. DeVore

A distributed parallel processing toolbox. (distributed processin..., parallel computing, distributed parallel ...)

PP_FEVAL(PR_OPTIONS,PR_PATH,PR_COMMAND,varargin)

PP_GET_STATUS(PR_REQUESTS)

PP_SERVER(PR_OPTIONS,PR_REQUEST_PATH)

PMI by Daniel Lee

This is a toolbox to manage parallel Matlab processes from a master Matlab session. (distributed processin..., parallel computing, tools)

PMI_BEval(cmd);

PMI_Bcast(varargin);

PMI_Eval(eid, cmd);