Four parameters logistic regression - There and back again by Giuseppe Cardillo

Fit data points with a four points logistic regression or interpolate data. (statistics, chemistry, pharmaceutical)

L4Pinv(cf,y)

[cf G]=L4P(x,y,varargin)

iSignal 2.7 by Tom O'Haver

Interactive smoothing, differentiation, peak sharpening and measurement of time-series signals. (signal processing, data import, chemistry)

pY=isignal(DataMatrix,xcenter,xrange,sm,sw,em,dm,rm,s1,s2,s...

RGDS_Practical_Guide by Ronald/Daniel

The location for programs linked to the book <title> that will be published 2013. (simulation, pharmaceutical)

concmod(regimenType, numSubjects)

MATLAB Tools for Scientist by Asawari Samant

Files from the webinar: MATLAB Tools for Scientists- Introduction to Data Analysis and Visualization (curve fitting, biotech, dose response)

Characterization of Dose-Response Behavior

Dose Response Analysis

DoseResponseFit(varargin)

Clinical Test Performance by Giuseppe Cardillo

The test calculate the performance of a clinical test based on the Bayes theorem (biotech, pharmaceutical, clinical test perform...)

partest(varargin)

Five parameters logistic regression - There and back again by Giuseppe Cardillo

Fit data points with a five points logistic regression or interpolate data. (statistics, chemistry, pharmaceutical)

L5Pinv(cf,y)

[cf G]=L5P(x,y,varargin)

Three parameters logistic regression - There and back again by Giuseppe Cardillo

Fit data points with a three points logistic regression or interpolate data. (statistics, chemistry, pharmaceutical)

L3Pinv(cf,y)

[cf G]=L3P(x,y,varargin)

Nuclear Medicine Calculator by Omer Demirkaya

It is a simple decay calculator with most of the nuclear medicine isotopes. (physics, pharmaceutical)

gethalflifeunit(numb)

getisotopehalflife1(isotope)

getisotopephotopeak(isotope)

a fast method of reading data from PDB files by Evan

This file is a blazingly fast method of reading PDB files (biotech, pharmaceutical, protein data bank)

fastPDBRead(readFile)

A Graphical User Interface for Solving Delay Differential Equations and doing Local Search by Soumya Banerjee

A GUI for solving a set of delay differential equations (DDEs) and local search for best solutions (biotech, statistics, data import)

odesolver_outline

...

dde_auto_fit

An Efficient Technique for White Blood Cells Nuclei Automatic Segmentation by Mostafa M. A. Mohamed

This code is implementation of an algorithm to segment the nucleus of white blood cells (WBCs) (medical, white blood cells, image processing)

WBC_SegMadhloom.m

WBC_SegProposed.m

PCRefficiency by Giuseppe Cardillo

Set the Efficiency of a RT-PCR to use in the relative quantification of transcripts. (biotech, pharmaceutical, gene)

E=pcreff(ng,cp)

Monte Carlo Markov Chain for inferring parameters for an Ordinary Differential Equation model by Soumya Banerjee

This function uses a Monte Carlo Markov Chain algorithm to infer parameters for an ODE model (biotech, data export, data import)

mcmc_ode

analyze_mcmc(parallel)

test_gamma()

Protein Array Tool by Danny Allen

Converts an image of an R&D Systems Proteome Profiler Array into a list of relative protein levels. (image processing, medical, pharmaceutical)

FitProteinArray(ImageType,TemplateFileName, Manual, ImageFi...

FitProteinArrayGUI()

minBoundingBox(X)

Graphical User Interface for Solving Ordinary Differential Equations by Soumya Banerjee

A Graphical User Interface for Solving Ordinary Differential Equations (Immune Response Model) (data export, data import, gui)

odecall_eclipse_tcl_jv_local(target,infected,...

odesolver_outline(varargin)

gm_wm_contrast by Dave

Calculates contrast between gray matter and white matter of mouse SC MRI Image (image processing, pharmaceutical, medical)

gm_wm_contrast.m

Linear regression on log transformed data by Soumya Banerjee

A function that takes two column vectors and does linear regression on the data (statistics, mathematics, data import)

regress_custom(input_x,input_y,desc,x_label,y_label)

FCS data reader by Laszlo Balkay

Read FCS 2.0 and FCS 3.0 format flow cytometry files (biotech, pharmaceutical, flow cytometry)

fca_readfcs(filename)

doseResponse by Ritchie Smith

Plots dose/response curve and calculates EC50 and Hill Coefficient. (pharmaceutical, pharmacology, physiology)

[hillCoeff ec50]=doseResponse(dose,response)

Covariance NMR Toolbox by David Snyder

A collection of MATLAB functions implementing common covariance NMR processing methods (chemistry, nmr, biotech)

DNA MicroArray Image Processing Case Study by Robert Bemis

Case study used in Biomedical and Image Processing seminars (highlights algorithm development). (biotech, intensity, segment spot)

Microarray Spot Finding Example

[x,y]=limits(a)

r=range(x)

MATLAB Programming Example for U2500A USB Modular Data Acquisition (DAQ) module’s Analog Input by Neo

This program sets the USB DAQ module to sample immediately without waiting for a trigger signal (aerospace, automotive, biotech)

DNAtranslator by Giuseppe Cardillo

Convert a DNA sequence in an amino acids sequence (biotech, pharmaceutical, translator)

ps=DNAtranslator(x)

HWtest by Giuseppe Cardillo

Test if a locus is under Hardy Weinberg Proportion (biotech, pharmaceutical, locus)

pvalue=hwetest(varargin)

hwedemo.m

MCShape by Brian Schmidt

Multiparticle Tracking algorithm for cell motion and morphology (cell tracking, image processing, pharmaceutical)

[]=MCShape03(parameterfilename)

Partwobeads.m

Twobeads.avi

Web Deployment Using MATLAB by Todd Flanagan

A web-based gene analysis demonstration using MATLAB Builder for COM (web deployment, com, webinar)

applyLogRatio

applyThreshold(threshold)

filterGenes;

MCGH by junbai wang

Matlab toolbox with graphical interface to analysis DNA microarray-based comparative genomic hybridi (biotech, pharmaceutical, analysis)

Image Acquisition and Processing with MATLAB® Webinar Files by Alan Hwang

This file contains the demos used in the Image Acquisition and Processing with MATLAB® Webinar. (blister, image acquisition, webinar)

BlisterRead(RGB)

Blister_GUI(varargin)

BlisterPackInspection.m

Flex02-08D Correlator Interface by Marcel Leutenegger

A graphical user interface to the Flex02-08D hardware correlator accessing the Windows driver. (biotech, pharmaceutical, correlator)

flex02dc08.m

Flex02-01D Correlator Interface by Marcel Leutenegger

A graphical user interface to the Flex02-01D hardware correlator accessing the Windows driver. (biotech, pharmaceutical, correlator)

flex02dc01.m

MArray by junbai wang

MArray: analysing single, replicated or reversed microarray experiments. (analysis, data, biotech)

CMorph by Brian Schmidt

Tracking algorithm for cell motion and morphology (biotech, cell tracking, pharmaceutical)

[]=CMorph03(parameterfilename)

Parsampleflowgrav050901b1.m

sampleflowgrav3um60X500fps050901b1.avi

Agilent's USB Modular Scope U2701A and U2702A MATLAB Programming Example by Neo

Shows how instrument connection is made, fetching of captured data and displaying of data (aerospace, automotive, biotech)

U2701xSampleProgram(Auto).m

U2701xSampleProgram(Manual).m

MATLAB Programming Example for Agilent's U2600A USB Modular (DAQ) Digital IO module by Neo

The U2651A is used as an example here. (aerospace, automotive, biotech)

DIO_Start.m

MATLAB Programming Example for U2500A USB Modular Data Acquisition (DAQ) module’s Digital IO by Neo

This program sets the USB DAQ module’s first 8 Digital IO ports as digital outputs (aerospace, automotive, biotech)

DIO_PutValue.m

MATLAB Programming Example for U2500A USB Modular Data Acquisition (DAQ) module’s Analog Output by Neo

Analog output sends out discrete values and the analog input is used to measure that value (aerospace, automotive, biotech)

AO_PutSample_GetSampe.m

MATLAB Programming Example for U2300A USB Modular Data Acquisition (DAQ) module’s Digital IO by Neo

This program sets the USB DAQ module’s first 16 Digital IO ports to be digital inputs (aerospace, control design, automotive)

DIO_Start.m

MATLAB Programming Example for U2300A Modular USB Data Acquisition (DAQ) module’s Analog Output by Neo

This program sets the USB DAQ module to output a continuous sine wave. (aerospace, control design, automotive)

AO_RepeatOutput.m

Getting Started – MATLAB with Agilent's U2300A Multifunction DAQ Devices by Neo

These USB multifunction data acquisition devices can be used with MATLAB® Data Acquisition Toolbox. (agilent, start, u2300a)

MATLAB Adaptor for Agilent's U2600A Series USB Data Acquisition Devices (DAQ) by Neo

This enables you to use MATLAB and MATLAB’s Data Acquisition Toolbox with U2600A Series DAQ devices. (aerospace, automotive, biotech)

MATLAB Adaptor for Agilent's U2500A Series USB Data Acquisition (DAQ) Devices by Neo

This enables you to use MATLAB and MATLAB’s Data Acquisition Toolbox with U2500A Series DAQ devices (aerospace, automotive, measurement)

MATLAB Adaptor for U2300A Series USB Data Acquisition Devices (DAQ) & U2802A Signal Conditioner by Neo

This enables you to use MATLAB and MATLAB’s Data Acquisition Toolbox with U2300A Series DAQ devices. (aerospace, automotive, biotech)

Taxi - movement of bacteria to the food by Shmuel Ben-Ezra

Friendly user-interface simulating the chemo-taxis movement of biological systems (biotech, pharmaceutical, chemotaxis)

taxi(varargin)

Fractal visualisation of genomic sequences by Sam Roberts

Visualise n-mer nucleotide sequences using a fractal visualisation based on a Sierpinski gasket. (pharmaceutical, graphics, biotech)

nmervis(sequence,n,varargin)

nmervisdemo.m

simulink realization of Morris-Lecar neuron model by Guan Wenye

simulink realization of Morris-Lecar neuron model (ml, ml neuron model, neuron)

ML_parameter.m

ML

Two-Syringe MED Perfusion System by Matthew A. I. Ua Cruadhlaoich

Instructions and m-files for setting up a remote-controlled multielectrode dish perfusion system. (biotech, pharmaceutical, multielectrode dish)

mediumchanger1.m

mediumchanger2.m

mediumrefresher.m

Flex99OEM-12C Correlator Interface by Marcel Leutenegger

A graphical user interface to the Flex99OEM-12C hardware correlator accessing the Windows driver. (biotech, pharmaceutical, correlator)

flex99.m

SimBiology Tutorial by Asawari Samant

Files used in Online SimBiology Tutorial (simbiology, apoptosis model, tutorial)

ParameterEstimation.m

Blood Glucose Model for Insulin Control by John Hedengren

A blood glucose model of type-1 diabetics. (diabetics, pharmaceutical, blood glucose)

blood_glucose(t,x)

step.m

Hodgkin-Huxley Model by Murat Saglam

This is a simulation of Hodgkin-Huxley equations using simulink blocks. (hodgkinhuxley model, biotech, pharmaceutical)

HHparameters.m

HH