Efficient Implementation for Spherical Flux Computation (3D) by Max W.K. Law

Fourier domain based analytical compution of 3D multiradii spherical flux responses (active contour models, curvilinear, flux)

fastflux3.m

SegmentTool: An Interactive GUI for Segmenting Images by Brett Shoelson

Interactively find the best approach to segmenting (masking) your image (app, image, gui)

SegmentTool

cellfind(z)

createButtonLabel(string,varargin)

Efficient Implementation for Spherical Flux Computation (2D) by Max W.K. Law

Compute the 2D multi-radii spherical (circular) flux responses (flux, segmentation, tubular)

varargout=coormatrix(dimension);

fastflux2.m

fastflux2demo.m

Graph Cut for image Segmentation by Amarjot

The code segments the grayscale image using graph cuts. (image processing, signal processing, segmentation)

graphcuts(I,pad,MAXVAL)

Active Contours implementation & test platform GUI by Nikolay S.

Implementation and demonstration of several active contours segmentation methods. (geodesic snakes, enhancement, segmentation)

Active Contours implementation & test platform GUI

ActiveContoursWihoutEdges(hObject,mask)

LevelSetEvolutionWithoutReinitialization(Img,sigma,epsilon,...

Segmentation of retinal layers in OCT images with graph theory by ted teng

Demonstrates segmentation of retinal layers in OCT images with graph theory. (image processing, graph theory, ophthalmology)

graphkshortestpaths( G, S, T, K )

octGraphTheoryDemo.m

Segmentation by Micael Couceiro

Multiple Image Segmentation using PSO, DPSO, FO-DPSO and exhaustive methods. (pso, segmentation, optimization)

segmentation.m

preprocessing, segmentation.. gui by jerin

gui for some common preprocessing and segmentation.. good for quick checks on a given pic. (segmentation, thresholding, gui)

octr(op)

Active contours driven by local Gaussian distribution fitting energy by li

This Matlab code implements a segmentation method using local Gaussian distribution fitting energy. (image segmentation, segmentation, level set)

evolution_LGD(Img,u,epsilon,Ksigma,KONE,KI,KI2,mu,nu,lambda...

Demo_LGD_1.m

Demo_LGD_2.m

Active contour platform by olivier bernard

Compare the performance of different level sets and active contours methods. (level sets, active contours, segmentation)

Active contour platform

creaseg()

creaseg_bernard(img,init_mask,max_its,scale,thresh,color,di...

Local binary patterns by Nikolay S.

Calculates image LBP (Local binary patterns). (feature detection, lbp, segmentation)

efficientLBP(inImg, filtDims, isEfficent)

snailMatIndex.m

Soft thresholding for image segmentation by SANTIAGO AJA-FERNANDEZ

Image segmentation based on histogram soft thresholding (fuzzy, thresholding, image processing)

M2=shiftmat(M1,des)

[S, MG, Nmax]=seg_fuzzy(I,smooth,Nm)

An Efficient Technique for White Blood Cells Nuclei Automatic Segmentation by Mostafa M. A. Mohamed

This code is implementation of an algorithm to segment the nucleus of white blood cells (WBCs) (medical, white blood cells, image processing)

WBC_SegMadhloom.m

WBC_SegProposed.m

Simple single-seeded region growing by Stéphane

Segmentation by growing a region from user defined seed point, using intensity mean measure. (image processing regi..., how to set the tolera..., image processing)

segCroissRegion(tolerance,Igray,x,y)

Image Segmentation Tutorial ("BlobsDemo") by Image Analyst

Image Processing Tutorial to demonstrate the basic concepts to beginner users. (demo, image analysis, image processing)

BlobsDemo.m

Cell Tracking. by Siva Malla

Blood Cell Tracking System (track, segmentation, image)

P0701.m

P0702.m

P0703.m

Color Clustering Matlab by GAGAN

Computes the clusters of Pixels based upon their color. (color, color matlab, clustering)

binary_quant.m

Active Shape Model (ASM) and Active Appearance Model (AAM) by Dirk-Jan Kroon

Cootes 2D/3D Active Shape & Appearance Model for automatic image object segmentation and recognition (2d, active appearance mod..., active shape model)

A=imresize3d(V,scale,tsize,ntype,npad)

AAM_2D_example.m

AAM_3D_train_example.m

Edge Detection by Krishna Prasad

This program find out the edge of an given image. (edge detection, intuitionistic fuzzy ..., hesitation degree)

IFDedgedetection.m

Snake : Active Contour by Dirk-Jan Kroon

Snake Segmentation (Kass et al), 2D/3D including GVF and balloon force (Easy to read code) (1987, witkin, contour)

B=SnakeInternalForceMatrix2D(nPoints,alpha,beta,gamma)

B=SnakeInternalForceMatrix3D(FV,alpha,beta,gamma)

ExternalForceImage2D(I,Wline, Wedge, Wterm,Sigma)

Iris segmentation using Daugman's integrodifferential operator by Anirudh Sivaraman

This program takes as input the image of the iris f human eye and localises the iris and pupil by fi (application, daugman, circle)

[L]=lineint(I,C,r,n,part)

[O]=drawcircle(I,C,r,n)

[b,r,blur]=partiald(I,C,rmin,rmax,sigma,n,part);

Segmentation and Binarization by Roberto Herrera

A small example of segmentation using the features, imextendedmax, bwmorph and morphologie mathemati (binarization, image processing, segmentation)

demo_segmentacion.m

color Image Segmentation by Athi

Segments a color image into regions. (clustering, segmentation, image segmentation)

colImgSeg(inImg, nBins, winSize, nClass)

SampleUsage.m

Color segmentation by Delta E color difference by Image Analyst

User draws region and this finds pixels in the image with a similar color, using Delta E. (segmentation, color, image processing)

DeltaE()

level set for image segmentation by Chunming Li

This Matlab code implements an edge based geometric active contour model without reinitialization. (level set, segmentation, without reinitializat...)

drlse_edge(phi_0, g, lambda,mu, alfa, epsilon, timestep, it...

demo_1.m

demo_2.m

K-means image segmentation by Pablo Fonseca

K-means image segmentation based on histogram to reduce memory usage which is constant for any size. (clustering, kmeans, image)

kmeansclustering(im, k)

shrinkWrap by Sean de

shrinkWrap creates a binary map for automatic segmentation of high intensity areas in a 2D/3D images (image processing, segmentation, automatic)

shrinkWrap(varargin)

Viewer3D by Dirk-Jan Kroon

MIP, Color, Slice and Shaded 3D (shearwarp) Volume Rendering, interactive 3D view/measurement GUI (3d, dicom, mip)

B=SnakeInternalForceMatrix2D(nPoints,alpha,beta,gamma)

B=SnakeInternalForceMatrix3D(FV,alpha,beta,gamma)

ErrorData3D(varargin)

segmentation evaluatation by M. A Balafar

gets label matrix of a tissue in segmented and ground truth and returns similarity indices (segmentation, evaluation, dice)

[Jaccard,Dice,rfp,rfn]=sevaluate(m,o)

Brainwebread by M. A Balafar

get address of the files downloaded from Brainweb and return image and ground truth (segmentation, brainweb, phantom based brain i...)

[i, q]=Brainwebread(am,ai)

IBSRread by M. A Balafar

get address of the files downloaded from IBSR website and return image and ground truth (segmentation, ibsr, real brain images)

[q,i]=IBSRread(am,ai,n)

Pulse Waveform Delineator by ABing

An automatic delineator was proposed to detect the fiducial points of blood pressure waveforms (blood pressure, delineation, segmentation)

abpview(bingosig,bingoanns,bingoannp,bingoannd)

delineator(abpsig,abpfreq)

runme.m

Custom-shaped histogram by Image Analyst

Transform an image to have any histogram you want. (color detection, fun, segmentation)

shaped_histogram()

threshold(varargin)

threshold_grayscale_image(original_image, min_threshold, ma...

Quad-Tree segmentation - MEX by Ahmad

Segments an input image using Quad-trees (quadtree, segmentation, clustering)

quadtreeseg( im, varargin )

Radon-Like Features by Ritwik Kumar

Radon-Like Features can be used for image segmentation and classification. (image processing, segmentation, classification)

F=makeBarFilters(sup, or, sc)

getEdgeFeatures(im, sup, sc, or)

radonLikeFeaturesDemo.m

KMeans Segmentation - MEX by Ahmad

Given N data elements of R dimensions (N x R matrix), it segregates the n elements into k clusters (kmeans, segmentation, clustering)

kmeansK( data_vecs, k )

showMaskAsOverlay by Brett Shoelson

Show (multiple) segmentation mask(s) with user-specified transparency/color as overlay on image (mask, visualization, image processing)

showMaskAsOverlay2(opacity, mask, overlaycolor, varargin)

clusterImg by Brett Shoelson

Interactively segment RGB image into n user-defined clusters. (morphology, kmeans cluster color ..., segmentation)

clusterImg(imgin,Clusters,varargin)

ashape: a pedestrian alpha shape extractor by us

extracts 2d alpha shapes from a set of x/y data points (alpha shape, segmentation, geometry)

fh=aslib(varargin)

p=ashape(varargin)

Image segmentation using Fuzzy C-means with two image inputs by Simon Cichosz

This Matlab script illustrate how to use two images as input for FCM segmentation (can anyone help me ou..., fcm, fuzzy cmeans)

Fuzzy2images.m

MRI Brain Segmentation by Robert Bemis

Neuroimaging Case Study for seminars and webinars. (brain, 3d segmentation, segmentation)

StepThru(mfile,ws)

UpdateSliceOMatic(X,hSlico)

[x,y]=limits(a)

Spectral Clustering Algorithms by Asad Ali

Implementation of four key algorithms of Spectral Graph Clustering using eigen vectors : Tutorial (spectral clustering, graph segmentation, normalized cuts)

CalculateAffinity(data)

GenerateData(select)

Jordan_Weiss.m

Draw Bounding Box by Shadab Khan

This function draws bounding boxes around blobs in a binary image. (bounding box, draw bounding box, draw rectangle)

Snakes with class by Cris Luengo

Implementation of snakes using a class to enable automatic display of the snake over an image. (active contour, image processing, image analysis)

snakeminimize(varargin)

dip_snake

Active Contours: A New Distribution Metric for Image Segmentation by Romeil Sandhu

We present a new distribution metric for image segmentation for active contours. (active contours, segmentation, medical imaging)

Dirac2(x, sigma)

Init_SDF(mask)

Tryphon_NB(I, phi, iter, dt, alpha, flag_approx)

Bias Field Corrected Fuzzy C-Means by Dirk-Jan Kroon

Estimates the illumination artifact in 2D (color) and 3D CT and MRI and segments into classes. (bias field estimation, illumination, segmentation)

I=imgaussian(I,sigma,siz)

[B,U]=BCFCM2D(Y,v,Options)

BCFCM3D.m

Motion Detection in a video by Lokesh Peddireddi

motion detection in a video or live objects (motion detection, image process, could you give me you...)

Image Acquisition and Processing with MATLAB® Webinar Files by Alan Hwang

This file contains the demos used in the Image Acquisition and Processing with MATLAB® Webinar. (blister, image acquisition, webinar)

BlisterRead(RGB)

Blister_GUI(varargin)

BlisterPackInspection.m

Sparse Field Methods for Active Contours by Shawn Lankton

Very fast implementation of level sets. 2D and 3D support, written in C++/MEX with MATLAB wrapper. (segmentation, lists, active contours)

sfm_chanvese(img,mask,iterations,lam)

compile_sfm_chanvese.m

sfm_chanvese_demo.m

Principal Component Analysis (PCA) in MATLAB by Siamak Faridani

This is a demonstration of how one can use PCA to classify a 2D data set. (pca, classification, principal component a...)

pca.m