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updated 3 months ago

Open Reading Frame Figure Generator by Turner Conrad

Generate open reading frame representation from DNA sequences (dna, sequence, alignment)

ORFfigure(seqs,hasRef,minORFLen,addLabels,geneticCode)

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updated 3 months ago

Biological Sequence Pasting Shortcuts by Turner Conrad

Fast and efficient shortcuts for grabbing biological sequences from clipboard (nucleotide, protein, sequence)

protake

take

takes

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updated 5 months ago

Simple Gantt Chart (example) by Tiemen Schuijbroek

Very basic script to create Gantt charts easily. (gantt, chart, graph)

Gantt.m

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updated 8 months ago

Sequence Assembly App by Turner Conrad

Assemble overlapping sequences according to reference (pcr, sanger, sequence)

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updated 9 months ago

Amino acid conservation.zip by Guangdi Li

Guangdi Li (view profile)

Analysis of amino acid conservation using conservation index (conservationstatistic..., amino acid, conservation)

AAConservationIndex( Seq,SimilarityMatrix,AASymbol )

AnalysisInterSequenceDiversity( GenomeSeqA,GenomeSeqB, Ga...

AnalysisIntraSequenceDiversity( GenomeSeq, GagpCutoff )

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updated 11 months ago

Movie from a Sequence of Images in a folder by laksono

laksono (view profile)

This function makes a simple avi movie from all image files in a folder (image, movie, sequence)

images_seq_to_video( output_name,images_dir,img_format, f...

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updated 11 months ago

Whole Genome Resequencing Pipeline v2.0 by Turner Conrad

Automated mapping and indel realignment of resequencing data (whole genome sequenci..., sequence, sequencing)

WGRSPipeline(reads_file,ref_file)

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updated 1 year ago

FINDSEQ by Oleg Komarov

Oleg Komarov (view profile)

Find sequences of repeated (adjacent/consecutive) numeric values. NaNs and Infs are supported. (sequence, repeated, consecutive)

findseq(A,dim)

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updated almost 3 years ago

The Fibonacci Sequence by John D'Errico

John D'Errico (view profile)

Efficient computation of Fibonacci and Lucas numbers (fibonacci, lucas, numbers)

fibonacciEvolution

fibonacci(n,modulus)

fibrecur(N)

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updated almost 3 years ago

Aperiodic array generation by ben payne

Functions to create aperiodic 1D, 2D arrays from Thue-Morse, Fibonacci, Rudin-Shapiro algorithms (aperiodic, thuemorse, thue)

convert_1D_binary_to_2D_array(sequenc)

convert_2D_array_to_coordinates(sourceGrid,scatr_const)

generate_1D_baumSweet_array(generation,seed)

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updated 3 years ago

find sequences by Maxim Vedenyov

Maxim Vedenyov (view profile)

Finds sequences of repeated elements in array (find, sequence, array)

[i1a i2a]=find_sequences(b,n)

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updated 3 years ago

Modeling, Simulation and 3D Animation of a Simple Assembly Line by Simulink Dude

Simulink Dude (view profile)

A simple template that combines SimEvents, Stateflow, Simulink and Simulink 3D Animation. (simevents, 3d, animation)

assembly_line

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updated 3 years ago

Create avifile from frames. by Héctor Corte

Héctor Corte (view profile)

This code is for create an avifile from frames. (image processing, application, images)

Movie_from_frames.m

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updated 3 years ago

Kautz sequence generator by Owen Brimijoin

Generates example Kautz sequences of specified number of characters and subsequence lengths. (sequences, kautz sequence, de bruijn sequence)

kautz_generator(num_chars,subsequence_length)

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updated almost 4 years ago

2D Progressive Vector Diagram by Isaac Mancero Mosquera

Sequential Vector plot. Vector components x, y are required. User can define the initial position. (vector, sequence, progressive vector di...)

ipvd(vx,vy,xo,yo)

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updated 4 years ago

Figure to play and analyze videos with custom plots on top by Joao Henriques

A figure ready to scroll through and play videos. You can also draw any custom graphics on it. (figure, video analysis, video processing)

videofig.m

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updated 4 years ago

Motif Finding by Michael Chan

Michael Chan (view profile)

Illustrates Combinatorial and Viterbi-akin motif finding. (bioinformatics, probabilistic, combinatorics)

PWM( alignmentSetMatrix )

computeNewPWM_GivenSeqBasedOnPWM (alignmentSetMatrix, mot...

computeProbabilityOfSubsequence(sequenceToBeChecked, prob...

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updated 4 years ago

Compute Position Weight Matrix (PWM) and display SequenceLogo in terms of frequency by Michael Chan

Michael Chan (view profile)

Illustrates computation of best match scoring with PWM and constructs sequence logo. (bioinformatics, position weight matri..., match)

PWM( alignmentSetMatrix )

change1colorOnRGBToAnother(rgbImage, FromColor, ToColor)

computeProbabilityOfSubsequence(sequenceToBeChecked, prob...

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updated 4 years ago

Burrows-Wheeler Matrix (BWM) Transform by Michael Chan

Michael Chan (view profile)

Illustrates the Burrows-Wheeler Matrix (BWM) Transform. (bioinformatics, string, sort)

BWT (shortGeneStr)

cell2str(c,n,mode)

cell2string( cellString )

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updated 4 years ago

Suffix Array by Michael Chan

Michael Chan (view profile)

The objective is to illustrate suffix array computation. This does not include the search operation. (bioinformatics, string, sort)

determineSuffixArray( stringTarget )

usage_determineSuffixArray.m

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updated 4 years ago

Hermite polynomials by Avan Suinesiaputra

Generate Hermite polynomials Hn(x) where n is the polynomial order. (hermite, polynomial, sequence)

hermite(n,x)

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updated almost 5 years ago

WWW.RANDOM.ORG random integers/sequences/strings by Oleg Komarov

Oleg Komarov (view profile)

Get true random integers, sequences or strings (rand, integer, randi)

randorg(n, range, varargin)

seqorg(range, varargin)

strorg(n, len, varargin)

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updated almost 5 years ago

Gibbs Motif Sampler by Brad Ridder

Finds motifs and the optimum width via Gibbs sampling. No toolboxes required. (gibbs, sampling, markov)

gibbsmotifsampler(seqArray,motifVector,alphabet,Options)

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updated 6 years ago

Brain Teaser Solver by Rodolphe Sitter

Brain Teaser Solver: Compute the expected time to get a given sequence of independent outcomes. (sequence, outcome, dice)

OutcomeSequence(Sequence, N_Outcomes)

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updated 6 years ago

Eigenshuffle by John D'Errico

John D'Errico (view profile)

Consistently sorted eigenvalue and eigenvector sequences (eigenvalues, eig, order)

eigenshuffle(Asequence)

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updated 7 years ago

geospace by Edward Zechmann

This program outputs a geometric sequence of n-numbers from a to b. (geometric sequence, geometric series, sequence)

[m2]=geospace(a, b, n, flag)

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updated 7 years ago

Fibonacci Number Generator by Jesse

Jesse (view profile)

This is a program that generates any desired amount of fibonacci numbers. (fibonacci, numbers, sequence)

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updated almost 8 years ago

Generate a Faure sequence by Dimitri Shvorob

(perhaps while learning QMC) (integration, faure monte carlo, qmc)

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updated 8 years ago

Sequence Diagram tool by Eric Ludlam

Eric Ludlam (view profile)

Create UML style Sequence Diagrams (specialized, plotting, sequence)

sequencediagramdemo

createnode(nodename, linkidx, loop)

makelink(linkname, linkidx, lastnodeidx, nodeidx)

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updated 9 years ago

Collatz by Matt Fig

Matt Fig (view profile)

Tools for examining the Collatz sequence. (collatz, sequence, tools)

[]=collatzrange(n,d)

collatz(n)

collatz=collatzbackwardward(n,cnt)

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updated almost 10 years ago

Movie from a Sequence of Images by Nassim Khaled

Nassim Khaled (view profile)

Creates an avi movie from a sequence of images. (application, movie, sequence)

Movie_from_frames(name,filetype,number_of_frames,display_...

MOVIES.avi

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updated 10 years ago

Movie sequence by Olivier Salvado

Build a movie sequence and generate a avi file (data exploration, movie, camera)

CamSeqGUI(varargin)

CamSeqGen(cam,fps,method);

CamSeqPlay(seq,fps,filename);

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updated 13 years ago

mls.m by Christopher Brown

Generates maximum length sequences, which are pseudorandom noises useful for acoustic measurements. (sound, maximum, length)

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