image thumbnail

updated 5 days ago

Diffeomorphic Log Demons Image Registration by Herve Lombaert

Simple matlab code for 2D and 3D image registration using the diffeomorphic log-demons algorithm (image processing, image registration, 2d)

compose(ax,ay,az, bx,by,bz)

demons

demons

image thumbnail

updated 28 days ago

Spinning GIF by Adina Stoica

Create a spinning GIF around a 3D model (image processing, 3d, animatedgif)

spinningGIF(fname)

image thumbnail

updated 29 days ago

calc_meshdata by Immanuel Anjam

Calculates the affine transformations for integration in 2D/3D via the unit triangle/tetrahedron. (integration, 2d, unit reference triang...)

[X,W]=inttri(p)

[x,y]=geom(bs,s)

calc_meshdata(dim,p,ef,t)

image thumbnail

updated 1 month ago

DICOM View by Andrew Bazyk

GUI for viewing DICOM image sets (image processing, image, dicom)

DICOM_View

image thumbnail

updated 1 month ago

Fast 3D/2D Region Growing (MEX) by Christian Wuerslin

A very fast 2D and 3D region growing algorithm implemented in c++. (region growing, 3d, 2d)

RegionGrowing(dImg, dMaxDif, iSeed)

image thumbnail

updated 1 month ago

Cubehelix Colormaps by Stephen Cobeldick

Attractive full-color colormaps that also print in grayscale (keeping the sequence information). (colormap, color scheme, color)

cubehelix(N,start,rots,hue,gamma,rng)

cubehelix_find(map)

cubehelix_view(start,rots,hue,gamma,rng)

image thumbnail

updated 1 month ago

Canny edge detection in 2-D and 3-D by David Young

A Canny edge detector for two-dimensional image and three-dimensional volume data. (canny, edge detection, 3d)

canny(im, varargin)

checkattributes(a, classes, attributes)

exindex(arr, varargin)

image thumbnail

updated 2 months ago

3D rotation of 3D image by Alon Lanyado

3D rotation of 3D image (rotate, 3d, image)

rotImg3( img, teta, ax, method, pad )

rotationmat3D(r,Axis)

image thumbnail

updated 3 months ago

Multiecho enhancement for 2D/3D (N-D) images by Luke Xie

Enhances images using a weighted sum or MEFIC. (2d, 3d, grayscale)

img2=multiecho_enhance(img,str,weights)

image thumbnail

updated 4 months ago

intriangulation - which points are inside a 3d watertight triangulation? by Johannes Korsawe

Are 3D-testpoints located inside or outside an arbitrary watertight mesh with vertices and faces? (inside, 3d, point)

intriangulation(vertices,faces,testp)

image thumbnail

updated 4 months ago

2d and 3d brain plots by Jeremy Manning

Quickly and easily create 2d and 3d plots of fMRI data. (fmri, pcolor, 2d)

PATCH_3Darray(varargin)

cmu_to_mat(data, meta)

construct_meta(dims)

image thumbnail

updated 5 months ago

Hysteresis thresholding for 3D images (or 2D) by Luke Xie

Segments images based dual thresholding with 2D or 3D connectivity neighborhoods. (image processing, hysteresis, 3d)

[tri,hys]=hysteresis3d(img,t1,t2,conn)

image thumbnail

updated 5 months ago

3D Slicer by David Legland

Slicer for exploring 3D images (grayscale, color or vectorial) through planar or 3D slices. (slice, viewer, 3d)

computeSliceRGB(slice, displayRange, lut)

createRGBStack(img1, img2, img3)

cropStack(img, box)

image thumbnail

updated 6 months ago

2D image to STL mesh by Pasquale Franciosa

Convert 2D images to 3D stl CAD model (image processing, mesh, gui tools)

View3dIMAGE.m

view3d(arg,arg2)

image thumbnail

updated 7 months ago

Export figure to 3D interactive PDF by Ioannis Filippidis

Export figure as U3D file or directly to 3D interactive graphics within PDF. (3d, u3d, graphics)

[strmodelshading, strfaces_colors, strfaceshading, strcol...

arclength(px,py,varargin)

axes_extremal_xyz(ax)

image thumbnail

updated 8 months ago

ntimes by Michael Stachowsky

Multiplies arrays of 2D matrices in an efficient manner. (matrix multiplication, 3d, mathematics)

ntimes(a, b)

image thumbnail

updated 9 months ago

Operation Eigenfaust 3D (Tech Demo) by Mingjing Zhang

A playable first-person shooter demo featuring interative objects and real-time ray casting. (game, 3d, projection)

opeig

Operation Eigenfaust 3D Demo

image thumbnail

updated 11 months ago

Kinect Matlab by Dirk-Jan Kroon

Microsoft Kinect, OpenNI wrapper, Skeleton, Depth (kinect, microsoft, skeleton)

J=imagemax(Iin)

[I_SSD,I_NCC]=template_matching(T,I)

compile_cpp_files(OpenNiPath)

image thumbnail

updated 12 months ago

Imagine by Christian Wuerslin

4D/3D image visualization and evaluation GUI. (gui, image visualization, image analysis)

OptimalColor(iNBins)

fEvalLineFWHM(SData, sSelectionType, hTexts)

fEvalROIMean(SData, hTexts)

image thumbnail

updated 1 year ago

imsurf: 3D images by Matthew Arthington

Plot images as 3D planes with full control over position and scale. (image, 3d, plot)

h=imsurf(imageIn,upperLeftPoint3,normal,imXDirVec,scale,v...

image thumbnail

updated 1 year ago

Surface areas of contour by HY

This function outputs surface areas within each contour and their heights. (area, contour, 3d)

ContourArea( C )

image thumbnail

updated 1 year ago

overlayVolume by J.A. Disselhorst

Displays 3 orthogonal slices from a 3D volume with optional overlay. (image processing, overlay, 3d)

overlayVolume

image thumbnail

updated 1 year ago

Three dimensional implementation of the Canny edge detection by boyexex

Can be used to detected surfaces from a 3D volume. (edge detection, canny edge, 3d)

canny3D(im, filsize, sigma, th_up, th_low)

hysteresis(im,im_mag,th_low)

nonmax_sup(imfil_x,imfil_y,imfil_z,th_up, th_low)

image thumbnail

updated 1 year ago

Scalable Vector Graphics (SVG) Export of Figures by Juerg Schwizer

Converts 3D and 2D MATLAB plots to the scalable vector format (SVG). (specialized, plotting, svg)

demo_svg_water

plot2svg.m

simulink2svg

image thumbnail

updated 1 year ago

Stereo Matching by Wim Abbeloos

A GUI demonstrates an efficient stereo matching algorithm. (stereo, matching, computer vision)

polyfit(x,y,n)

stereomatch(imgleft, imgright, windowsize, disparity, spa...

stereovision(varargin)

image thumbnail

updated 1 year ago

3D Peano space filling curve by Zhihua Zhang

Generate a space filling curve (Peano curve) for a sequence 1..n (mathematics, peano, 3d)

Peano3D(level, init, axes, orientation, Position)

image thumbnail

updated almost 2 years ago

inttet by Immanuel Anjam

3D integration quadrature for unit tetrahedron (3d, integration, quadrature)

inttet(p)

image thumbnail

updated almost 2 years ago

Ray Tracing Volume Renderer by Scott Robertson

Renders a 3D volume according to a intensity indexed color map and opacity map via ray tracing. (medical imaging, image processing, volume rendering)

ParallelRayGenerator3d(volume,dimx,dimy,raystep)

volumeRenderDemo.m

image thumbnail

updated almost 2 years ago

Intersection point of lines in 3D space by Anders Eikenes

Finding intersection point of lines in 3D space (two or more lines). (mathematics, lines, intersection)

lineIntersect3D(PA,PB)

image thumbnail

updated 2 years ago

Create a non Isotropic 3D Gaussian Point Spread Function (PSF) by Christopher Coello

Create an isotropic or non isotropic 3D Gaussian PSF (image processing, point spread function, 3d)

nonIsotropicGaussianPSF(inSigma,varargin)

image thumbnail

updated 2 years ago

3D Free Form Image Registration Toolbox (GUI) by Daniel Markel

A toolbox for performing image registrations on 4D RTOG files or any other volumetric image. (geometric transformat..., image registration, 3d)

Crop_image(varargin)

Dcoord(varargin)

Deform(varargin)

image thumbnail

updated 2 years ago

Function for Viewing MRI Slices by Aras

Allows the viewing of slices of MRI data in the NIFTI format. (nifti, mri, slice)

splic(x,y,z,t)

image thumbnail

updated 2 years ago

Kinect Microsoft SDK by Dirk-Jan Kroon

Video, Audio, Depth Stream and Skeleton tracking (microsoft sdk, 2d, 3d)

compile_cpp_files(MicrosoftSDKPath)

Example.m

ExampleMicrophone.m

image thumbnail

updated 2 years ago

Snake : Active Contour by Dirk-Jan Kroon

Snake Segmentation (Kass et al), 2D/3D including GVF and balloon force (Easy to read code) (snakes, active, contour)

B=SnakeInternalForceMatrix2D(nPoints,alpha,beta,gamma)

B=SnakeInternalForceMatrix3D(FV,alpha,beta,gamma)

ExternalForceImage2D(I,Wline, Wedge, Wterm,Sigma)

image thumbnail

updated 2 years ago

Laplacian in 1D, 2D, or 3D by Andrew Knyazev

Sparse (1-3)D Laplacian on a rectangular grid with exact eigenpairs. (matrix, mathematics, laplacian)

laplacian(varargin)

image thumbnail

updated 2 years ago

Quick Structured Mesh Generator by Tolga Birdal

Fast generation of structured meshes given the vertices (MEX!). Interpolation/resizing of the mesh. (structured mesh, depth map, point cloud)

[]=make_mesh_structured()

drawMesh(vertex, face, varargin)

image thumbnail

updated almost 3 years ago

Widefield Fluorescence Microscope point-spread function by Praveen Pankajakshan

Generate the point-spread function for a widefield fluorescence microscope (pointspread function, deconvolution, 3d)

maxintensityproj(I, ndir)

wfmpsf(lambdaEx, lambdaEm, numAper, magObj, rindexObj, ...

image thumbnail

updated 3 years ago

Match Plot by Li yang Ku

Draw matching lines between corresponding points in two image. Useful for SIFT feature matching. (plot, match, line)

match_plot(img1,img2,points1,points2)

image thumbnail

updated 3 years ago

Fast STL import function by Eric Trautmann

Function to import .stl geometry model files into matlab. (geometry, stl, model)

varargout=import_stl_fast(filename,mode)

image thumbnail

updated 3 years ago

B-spline Grid, Image and Point based Registration by Dirk-Jan Kroon

B-spline registration of two 2D / 3D images or corrsp. points, affine and with smooth b-spline grid. (geometric transformat..., image registration, registration)

A=imresize3d(V,scale,tsize,ntype,npad)

Dlocal=jacobiandet_transform_2d_double(Ox,Oy,Isize,dx,dy)

E=strain(Ux,Uy,Uz)

image thumbnail

updated 3 years ago

Viewer3D by Dirk-Jan Kroon

MIP, Color, Slice and Shaded 3D (shearwarp) Volume Rendering, interactive 3D view/measurement GUI (volume render, volume rendering, mip)

B=SnakeInternalForceMatrix2D(nPoints,alpha,beta,gamma)

B=SnakeInternalForceMatrix3D(FV,alpha,beta,gamma)

ErrorData3D(varargin)

image thumbnail

updated 3 years ago

2D - 2D Projective Homography (3x3) Estimation by SasiKanth

This function estimates 2D-2D projective homography between two images. (homography, image processing, signal processing)

homography( i1, i2)

image thumbnail

updated 3 years ago

meshCanopy by Sean de

Display a mesh above a grayscale image (mesh, slice, colormap)

meshCanopy(I,Mdata,Mmap,height)

image thumbnail

updated 3 years ago

Solution of Differential Equations with MATLAB & Simulink: Lorenz Attractor Case Study by Simulink Dude

Simulink design pattern for solving differential equations, visualize results in MATLAB graphics (differential, equation, lorenz)

lorenz_graphs(block)

lorenz_graphs_level_1(t,x,u,flag, x_initial)

lorenz_attractor

image thumbnail

updated 3 years ago

freezeColors / unfreezeColors by John Iversen

Use multiple colormaps per figure! Version 2, now works for many types of objects, not only images. (annotation, customization, colormap)

freezeColors(varargin)

unfreezeColors(h)

Contents.m

image thumbnail

updated 3 years ago

Fast Non-Local Means 1D, 2D Color and 3D by Dirk-Jan Kroon

NL-means image and signal denoising filter based on similarity between pixel patches (nonlocal, means, nlmeans)

J=NLMF(I,Options)

NLMF2Dtree(I, Options)

image thumbnail

updated 3 years ago

Image Edge Enhancing Coherence Filter Toolbox by Dirk-Jan Kroon

Advanced 2D/3D noise removal and edge enhancing with anisotropic diffusion filtering ( Weickert ) (scheme, diffusion scheme, diffusion)

CoherenceFilter(u,Options)

D=derivatives(I,option)

I=imgaussian(I,sigma,siz)

image thumbnail

updated 3 years ago

OpenSURF (including Image Warp) by Dirk-Jan Kroon

SURF (Speeded Up Robust Features) image feature point detection / matching, as in SIFT (registration, surf, opensurf)

D=FastHessian_BuildDerivative(r,c,t,m,b)

Iout=affine_warp(Iin,M,mode)

PaintSURF(I, ipts)

image thumbnail

updated 3 years ago

MERGING 3D POINT CLOUDS WITH RADIOMETRIC ENHANCEMENT by Ulas Yilmaz

Modules for radiometric enhancement of colored 3D point clouds by propagating colors (3d, image processing, laser scanner)

cpropagate.m

cnnsearch.m

cnnsearchTest.m

image thumbnail

updated 3 years ago

RAPID RADIOMETRIC ENHANCEMENT OF COLORED 3D POINT CLOUDS USING COLOR BALANCING by Ulas Yilmaz

Modules for radiometric enhancement of colored 3D point clouds using color balancing (image processing, 3d, radiometric enhanceme...)

cbalance.m

cbalanceTest.m

Contact us