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updated 1 month ago

Fast 3D/2D Region Growing (MEX) by Christian Wuerslin

A very fast 2D and 3D region growing algorithm implemented in c++. (region growing, 3d, 2d)

RegionGrowing(dImg, dMaxDif, iSeed)

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updated 1 month ago

Dicom Operator - EsmeProcess by Jun Li

EsmeProcess functions dicom image operation including viewing, drawing, writing and statistic. (dicom, mask, header)

[meanGL1, stdGL1, meanGL2, stdGL2, ...

addmenuitems.m

allanumber(m, n, limit)

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updated 4 months ago

Hysteresis thresholding for 3D images (or 2D) by Luke Xie

Segments images based dual thresholding with 2D or 3D connectivity neighborhoods. (image processing, hysteresis, 3d)

[tri,hys]=hysteresis3d(img,t1,t2,conn)

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updated 6 months ago

Fast mutual information, joint entropy, and joint histogram calculation for N-D images by ja

Built for 'highest possible' speed. Can handle any number of dimensions, given sufficient memory. (joint histogram, joint entropy, 3d)

ent(J,K)

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updated 1 year ago

Animations by Ankur Pawar

Some animation in MATLAB (animation, graphics, 3d)

[xd,yd]=transform2d(x,y,tx,ty,phi,xr,yr,sx,sy)

epitrochoid(r1,r2,len)

hypotrochoid(r1,r2,len)

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updated 2 years ago

Snake : Active Contour by Dirk-Jan Kroon

Snake Segmentation (Kass et al), 2D/3D including GVF and balloon force (Easy to read code) (snakes, active, contour)

B=SnakeInternalForceMatrix2D(nPoints,alpha,beta,gamma)

B=SnakeInternalForceMatrix3D(FV,alpha,beta,gamma)

ExternalForceImage2D(I,Wline, Wedge, Wterm,Sigma)

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updated 3 years ago

B-spline Grid, Image and Point based Registration by Dirk-Jan Kroon

B-spline registration of two 2D / 3D images or corrsp. points, affine and with smooth b-spline grid. (geometric transformat..., image registration, registration)

A=imresize3d(V,scale,tsize,ntype,npad)

Dlocal=jacobiandet_transform_2d_double(Ox,Oy,Isize,dx,dy)

E=strain(Ux,Uy,Uz)

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updated 3 years ago

Viewer3D by Dirk-Jan Kroon

MIP, Color, Slice and Shaded 3D (shearwarp) Volume Rendering, interactive 3D view/measurement GUI (volume render, volume rendering, mip)

B=SnakeInternalForceMatrix2D(nPoints,alpha,beta,gamma)

B=SnakeInternalForceMatrix3D(FV,alpha,beta,gamma)

ErrorData3D(varargin)

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updated 3 years ago

Image Edge Enhancing Coherence Filter Toolbox by Dirk-Jan Kroon

Advanced 2D/3D noise removal and edge enhancing with anisotropic diffusion filtering ( Weickert ) (scheme, diffusion scheme, diffusion)

CoherenceFilter(u,Options)

D=derivatives(I,option)

I=imgaussian(I,sigma,siz)

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updated almost 4 years ago

multimodality non-rigid demon algorithm image registration by Dirk-Jan Kroon

non-rigid 2D and 3D image registration with demon (fluid) algorithm, extended with modality transf. (transforms, nonrigid image regist..., nonrigid)

A=imresize3d(V,scale,tsize,ntype,npad)

E=strain(Ux,Uy,Uz)

I3=movepixels(I1,Tx,Ty,Tz,mode)

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updated 6 years ago

Volume Render by Dirk-Jan Kroon

Volume Render GUI with mouse change able color and alpha maps (specialized, plotting, volume render)

VolumeRender(varargin)

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updated 8 years ago

label2rgb3D by payel ghosh

Creates a 4D rgb image from a 3D label image. (color, label2rgb, 3d)

rgb3d=label2rgb3d(varargin)

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