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updated 1 month ago

3DSpectra by Sara Nasso

A 3-dimensional quantification algorithm for LC–MS labeled profile data (proteomics, lcms, quantification)

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updated 1 month ago

Management of Accession Numbers and sequences by José Luis Ruiz

A GUI designed to management of big amount of accession numbers. (bioinformatics)

FASTA_MULTIFASTA(varargin)

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updated 5 months ago

Information-based Similarity Toolbox by Albert Yang

Information-based similarity index is an analysis of measuring distance between symbolic sequences (statistical physics, information theory, distance)

binmapping(signal)

checkfiletype(filename)

ibs(wrf1,wrf2)

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updated 5 months ago

Characteristic path length, global and local efficiency, and clustering coefficient of a graph by Nathan Cahill

Computes various graph-theoretic properties related to network connectivity (graph theory, characteristic path l..., global efficiency)

graphProperties( varargin )

exampleScript.m

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updated 6 months ago

shortest_distance_Dijkstra_algorithm.m by Alok Patel

Finds Shortest Distance between nodes using Dijkstra Algorithm. (shortest distance, distance algorithm, dijkstra algorithm)

shortestdistalgo(Weight_matrix,startterminal_matrix,endte...

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updated 6 months ago

Whole Genome Resequencing Pipeline v2.0 by Turner Conrad

Automated mapping and indel realignment of resequencing data (whole genome sequenci..., sequence, sequencing)

WGRSPipeline(reads_file,ref_file)

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updated 7 months ago

KEGGParser: parsing and editing KEGG pathway maps in Matlab by Arsen Arakelyan

Matlab graph based tool for KEGG pathway parsing, editing, visualization and analysis (bioinformatics, pathway visualization, graph manipulation an...)

KEGG_parser(varargin)

edge_add(bg,Source, Sink,edge_type)

edge_del(bg, SourceInd, SinkInd)

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updated 1 year ago

Building the component tree in quasi-linear time by Kang Wang

The connected components of the level sets can be organized in a tree structure. (component tree, connected operators, mathematical morpholo...)

buildComponentTree(F)

plotAdjacentTree(nodes, adjs)

demo.m

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updated 1 year ago

Significance Analysis of Microarrays (SAM) using Matlab by Eric

SAM is a popular method of finding differentially expressed genes through a microarray experiment. (significance analysis..., sam, gene expression)

bal_perm (seq_samp)

build_dperm (data, cl, type_mt, seq_samp)

d_null (d, type_mt)

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updated almost 2 years ago

Multi Class SVM by Cody

Model and classify training/test data sets into more than 2 classes with SVM. (svm, multiclass svm, support vector machin...)

multisvm(TrainingSet,GroupTrain,TestSet)

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updated 2 years ago

SCOPE: interactively tabulate SEER excel variables by Rex Cheung

This takes SEER excel column data interactively, tabulate them, write back in table format. (data import, data export, optimization)

output=xls2tabulate2xls(xlsfilename)

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updated 2 years ago

Graph manipulation by Arsen Arakelyan

These four files are intended for adding/deleting nodes and edges in biograph object (graphs, graph theory, graph manipulation)

edge_add(bg,Source, Sink, edge_col)

edge_del(bg, SourceInd, SinkInd)

node_add(bg, node_pos, node_size, UserData)

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updated almost 5 years ago

Web Deployment Using MATLAB by Todd Flanagan

A web-based gene analysis demonstration using MATLAB Builder for COM (biotech, pharmaceutical, webinar)

applyLogRatio

applyThreshold(threshold)

filterGenes;

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