MSiReader is a Matlab GUI for viewing and analysis of Mass Spectrometry Imaging data.
|28 Mar 2013||Ken Garrard||
MSiReader is an open source Matlab GUI and function library for visualization and analysis of MS Imaging data sets.
A variety of popular data formats are supported, including mzXML and imzML. Data processing functions include peak detection, spectrum export, customizable colormaps, normalization, background subtraction, image colocalization and batch processing of peak lists.
No compression or reduction algorithms are performed, allowing high resolving power data (small m/z increment) to be viewed and processed as long as the total data cube size does not exceed the available RAM.
MSiReader is available for free under the BSD-3 license. It requires a 64-bit Matlab installation (R2012a or later) with the image processing, statistics and bioinformatics toolboxes.