Thread Subject: Unable to use gethmmprof to get profile HMM form PFAM database

Subject: Unable to use gethmmprof to get profile HMM form PFAM database

From: Yong

Date: 27 Oct, 2009 02:49:02

Message: 1 of 1

Reply to this message
Add author to My Watch List
View original format
Flag as spam

I tried to use function gethmmprof to get profile HMM. My command is

hmm = gethmmprof(2)

Errors:

??? Error using ==> pfamhmmread at 70
Input is not a valid PFAM file.

Could you please share your experience in using this function in Bioinformatics toolbox?

Many thanks,

Yong

Tags for this Thread

Add a New Tag:

Separated by commas
Ex.: root locus, bode

What are tags?

A tag is like a keyword or category label associated with each thread. Tags make it easier for you to find threads of interest.

Anyone can tag a thread. Tags are public and visible to everyone.

rssFeed for this Thread

Contact us at files@mathworks.com