Community Profile

Contact

Technical Support DISCLAIMER: Any advice or opinions posted here are my own, and in no way reflect that of MathWorks. Professional Interests: SimBiology, Bioinformatics, Graphics, GUIs

Top 5% contributor

The issue you describe is an issue of "forward compatibility". To my best knowledge MathWorks trys to ensure that projects from ...

accepted

2

Answered 2 years ago

Hi Jerry, I am not sure whether I understand your question precisely. All references to "A" refer to the same species. Did you ...

1295 views

Responded 2 years ago

Dear Jerry, Which MATLAB release are you using? In MATLAB R2013a for example the following works as reaction A + A -> 2 A If 2A...

I have simulated models with more than 150 reactions myself in SimBiology and this works without problem. Have you seen the "ac...

1

Answered 2 months ago

I have attached a .zip file which contains a .sbproj file with a small example. In this example species_1 is created with consta...

Answered 1 year ago

Hello Zetty, in your code you are using the line simData = sbiosimulate(m1, cs, Dose) ; This way you create a S...

Are you sure that you are using the same simulation settings, initial values etc. in both situations? It might be worth contacti...

Should the upper limit come into play when running a simulation? In this case, you could set the upper limit using an event. Ha...

I have two questions: 1) Are you using the SimBiology Desktop? 2) Is the only difference between the two groups the dosing...

Steven is right with respect to the link he is refering to. After the loading of your simfunction in your file TEST, you need th...

0

Hi Namrata, The files from KEGG are not in the SBML format but in the KGML format (see <http://www.genome.jp/kegg/xml/ KGML s...

Answered 5 months ago

Have a look at this link <http://www.mathworks.com/matlabcentral/answers/93471-is-it-possible-to-use-simbiology-model-objects-wi...

Hello Nicolas, You can use rate rules to define parameters that are dependent on time. This link of the documentation explain...

Answered 9 months ago

Don't be afraid to ask technical support in those cases. In worst case the answer will be sorry, you do not have a license with ...

You can find an example explaining the combination of pooled (global) and unpooled (local) parameters here <http://www.mathworks...

I am not sure how much I can help you with your first two questions, but let me help you with the other three. There is no need...

Hi, I do not know your model so keep this in mind when reading my answers. 1) In a typical PK model, the input is likely to ...

Are you using the SimBiology Desktop? Do you want to get one set of parameters for all replicates? For each replicate set th...

Yes, it is possible. Have a look at this entry from the file exchange: <http://www.mathworks.com/matlabcentral/fileexchange/359...

Did I understand you correctly that you want to have a "normal" matrix rather than a sparse matrix? If this is the case you ...

The results between the GUI based calculation and your calculation in the command line differ because of a difference in the cal...

Out of memory issues can have many different root causes. Bart has valid points with the questions he asked. There are some more...

Given an integer n >= 0, generate the length n+1 row vector representing the n-th row of <http://en.wikipedia.org/wiki/Pascals_t...

Solve this!

2 years ago

You are given a cell array of strings and a string delimiter. You need to produce one string which is composed of each string fr...

Return a list of all values (sorted smallest to largest) that appear exactly three times in the input vector x. So if x = [1 2...

Given n, find the sum of the digits that make up 2^n. Example: Input n = 7 Output b = 11 since 2^7 = 128, and 1 + ...

A Collatz sequence is the sequence where, for a given number n, the next number in the sequence is either n/2 if the number is e...

There will always be at least one prime in the matrix. Example: Input in = [ 8 3 5 9 ] Output out is 4...

At one time or another, we all had to memorize boring times tables. 5 times 5 is 25. 5 times 6 is 30. 12 times 12 is way more th...

Given an integer n, make an n-by-n matrix made up of alternating ones and zeros as shown below. The a(1,1) should be 1. Example...

Load more