SimBiology® 2.3

Product Description

• Introduction and Key Features
• Working with SimBiology®
• Building a Model
• Running a Simulation
• Analyzing a Model
• Saving and Exporting Results

Introduction

SimBiology® extends MATLAB® with tools for modeling, simulating, and analyzing biochemical pathways. You can create your own block diagram model using predefined blocks. You can manually enter in compartments, species, parameters, reactions, events, rules, kinetic laws, and units, or read in Systems Biology Mark-Up Language (SBML) models. SimBiology software lets you simulate a model using stochastic or deterministic solvers and analyze your pathway with tools such as parameter estimation and sensitivity analysis. A graphical user interface (GUI) provides access to command-line functionality and lets you create and manage compartments, reactions, events, species, parameters, rules, and units.

Key Features

• Block diagram editor for constructing pathways
• Tools for parameter estimation and sensitivity analysis
• Stochastic, stiff deterministic, and nonstiff deterministic solvers
• Model components, including compartments, species, parameters, kinetic laws, reactions, events, algebraic rules, and units
• Project files that store models with simulation settings, simulation data, user-defined analysis tasks, and user-defined plot types

An example of the integrated environment available in SimBiology®. Graphical and programmatic tools provide functionality for modeling, simulation, and analysis. Click on image to see enlarged view.

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