SimBiology® 2.3

Product Description

• Introduction and Key Features
• Working with SimBiology®
• Building a Model
• Running a Simulation
• Analyzing a Model
• Saving and Exporting Results

Working with SimBiology®

You can interact with SimBiology via a block diagram editor, a customizable GUI, or the MATLAB command line. The block diagram editor lets you:

• Create a model using predefined blocks for species, parameters, compartments, and plots
• Lay the model out and align elements automatically
• View outputs from your model using the predefined plot block
• Create a library of user-defined blocks

You can create, simulate, and analyze biochemical pathway models and view simulation results from the GUI. An M-code capture tool automatically generates and captures MATLAB code for all GUI actions.

Additional GUI tools let you:

• View project and model organization
• Navigate and manipulate model tasks, model component groups, simulation and analysis settings, and plot types
• Add reference URLs, tags, or notes to projects, models, and model components
• Search compartments, species, reactions, events, parameters, and rules for a specific name, tag, annotation, or wild card
• Use the built-in kinetic laws and units or define your own

You can execute all SimBiology functions and incorporate them into your own MATLAB applications from the command line.

Command-line (left), tabular (center), and graphical (right) views of a model in SimBiology®. Models comprise a variety of components, such as compartments, species, reactions, parameters, rules, and events. Click on image to see enlarged view.

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