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SimBiology

Progress Plot for Fitting

Progress Plot for Fitting

Visualize parameter estimation progress in real time for both desktop and cluster simulations

Model Selection Information

Model Selection Information

Report parameter estimation quality measures (log-likelihood, AIC, BIC) consistently across all estimation algorithms, allowing direct comparisons between model parameterizations

Steady States

Steady States

Compute model steady states using the sbiosteadystate function, for example to equilibrate a model prior to dosing

SBML Support

SBML Support

Load and save the most recent SBML file format (level 3 version 1)

Model Examples

Model Examples

Open SimBiology model examples hosted on the MATLAB Central File Exchange from within the SimBiology desktop

Block Property Editor

Block Property Editor

Display and edit block properties with a single click

Latest Releases

R2016a (Version 5.4) - 3 Mar 2016

Version 5.4, part of Release 2016a, includes the following enhancements:

  • Progress Plot for Fitting: Visualize parameter estimation progress in real time for both desktop and cluster simulations
  • Model Selection Information: Report parameter estimation quality measures (log-likelihood, AIC, BIC) consistently across all estimation algorithms, allowing direct comparisons between model parameterizations
  • Steady States: Compute model steady states using the sbiosteadystate function, for example to equilibrate a model prior to dosing
  • SBML Support: Load and save the most recent SBML file format (level 3 version 1)
  • Model Examples: Open SimBiology model examples hosted on the MATLAB Central File Exchange from within the SimBiology desktop
  • Block Property Editor: Display and edit block properties with a single click

See the Release Notes for details.

R2015b (Version 5.3) - 3 Sep 2015

Version 5.3, part of Release 2015b, includes the following enhancements:

  • Application builder for model distribution and simulation​
  • Equations view of models
  • Viewing and editing reaction rates in the diagram view
  • Bioavailability example

See the Release Notes for details.

R2015a (Version 5.2) - 5 Mar 2015

Version 5.2, part of Release 2015a, includes the following enhancements:

  • Graphical representation of all modeling constructs
  • High-accuracy parameter sensitivities enabling more robust parameter optimization
  • Response-specific error models
  • Sensitivity analysis using the SimFunction object

See the Release Notes for details.

R2014b (Version 5.1) - 2 Oct 2014

Version 5.1, part of Release 2014b, includes the following enhancements:

  • Estimation of category-specific parameters using the sbiofit function
  • Parameter bounds in the sbiofit function
  • Desktop enhancements for estimation methods
  • Species, parameter, and compartment names accepted by the StatesToLog property

See the Release Notes for details.

R2014a (Version 5) - 6 Mar 2014

Version 5, part of Release 2014a, includes the following enhancements:

  • Desktop enhancements for model and task viewing, exploration, and editing
  • sbiofit and sbiofitmixed functions for parameter estimation
  • Enhanced command line calling of models for parameter scanning and sensitivity analysis

See the Release Notes for details.