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SimBiology Classes

Alphabetical List By Category

Modeling

Build Models

Model objectModel and component information
Compartment objectOptions for compartments
Species objectOptions for compartment species
Parameter objectParameter and scope information
Reaction objectOptions for model reactions
KineticLaw objectKinetic law information for reaction
Rule objectHold rule for species and parameters
Event objectStore event information
Root objectHold models, unit libraries, and abstract kinetic law libraries
PKModelDesign objectHelper object to construct pharmacokinetic model
PKCompartment objectUsed by PKModelDesign to create SimBiology model
PKModelMap objectDefine SimBiology model components’ roles
constructConstruct SimBiology model from PKModelDesign object
addCompartmentAdd compartment to PKModelDesign object

Extend Modeling Environment

Root objectHold models, unit libraries, and abstract kinetic law libraries
AbstractKineticLaw objectKinetic law information in library
Unit objectHold information about user-defined unit
UnitPrefix objectHold information about user-defined unit prefix

Simulation

Simulate Responses to Biological Variability and Doses

SimFunction objectFunction-like interface to execute SimBiology models
ScheduleDose objectDefine drug dosing protocol
RepeatDose objectDefine drug dosing protocol
Variant objectStore alternate component values
SimData objectSimulation data storage
Configset objectSolver settings information for model simulation
SolverOptionsSpecify model solver options
RuntimeOptionsOptions for logged species
CompileOptionsDimensional analysis and unit conversion options

Scan Parameter Ranges

SimData objectSimulation data storage
Configset objectSolver settings information for model simulation
SolverOptionsSpecify model solver options
RuntimeOptionsOptions for logged species
CompileOptionsDimensional analysis and unit conversion options
SimFunction objectFunction-like interface to execute SimBiology models
SimFunctionSensitivity objectSimFunctionSensitivity object, subclass of SimFunction object

Calculate Sensitivities

SensitivityAnalysisOptionsSpecify sensitivity analysis options
SimData objectSimulation data storage
Configset objectSolver settings information for model simulation
SolverOptionsSpecify model solver options
RuntimeOptionsOptions for logged species
CompileOptionsDimensional analysis and unit conversion options
SimFunction objectFunction-like interface to execute SimBiology models
SimFunctionSensitivity objectSimFunctionSensitivity object, subclass of SimFunction object

Estimation

Import Data

groupedData Table-like collection of data and metadata

Nonlinear Regression

groupedData Table-like collection of data and metadata
EstimatedInfo objectObject containing information about estimated model quantities
LeastSquaresResults objectResults object containing estimation results from least-squares regression
OptimResults objectEstimation results object, subclass of LeastSquaresResults
NLINResults objectEstimation results object, subclass of LeastSquaresResults
ParameterConfidenceIntervalObject containing confidence interval results for estimated parameters
PredictionConfidenceIntervalObject containing confidence interval results for model predictions

Nonlinear Mixed-Effects Modeling

CovariateModel objectDefine relationship between parameters and covariates
groupedData Table-like collection of data and metadata
EstimatedInfo objectObject containing information about estimated model quantities
NLMEResults objectResults object containing estimation results from nonlinear mixed-effects modeling

Deployment

SimBiology.export.ModelExported SimBiology model object
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