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Generate C/C++ code for ARM processor using Simulink Coder

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It is said "You can configure a Simulink® model to generate code, build an executable, and then run the executable on your Altera® SoC platform. The executable runs in the Linux® environment on the ARM® Cortex-A9 processor on the Altera SoC platform."
1. There is something basic that I don't understand here, c/c++ code is independent of architecture (ARM/Intel, etc.), therefore why is there is need to configure the generating code to one process of another, if the result is C/C++ independent source code, which is built somewhere else (not in Simulink).
2. Another thing - Why is it for Linux ? What can I do to make it OS independent (bare-metal - no OS) ?
Thank you, Ran

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