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How to remove weak edges in a binary photo?

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Naim
Naim on 11 Jul 2017
Commented: Naim on 11 Jul 2017
See attached photos for reference.
I tried watershedding, it breaks apart the main body and doesn't even touch the part I want disconnected!
morphology is no good, the holes in the main body easily break in two before the edges I want disconnected come off.
imfill doesn't solve this, it fills the hole between the two trouble areas as well as the holes in the main body.
I have thousands of similar photos, so I need to come up with something robust.
I'd appreciate any help I could get!

Accepted Answer

Image Analyst
Image Analyst on 11 Jul 2017
It's not exactly clear where to separate the blobs. There are many, many thin parts where a separation could possibly be made. You might try filling in black islands in a certain size range and then trying watershed again. So invert the image, call bwareafilt(), then invert again.
  3 Comments
Naim
Naim on 11 Jul 2017
good stuff Image Analyst, I'll check it out.

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