GIFT is an application supported by the NIH under grant 1RO1EB000840 to Dr. Vince Calhoun and Dr. Tulay Adali. It is a MATLAB toolbox which implements multiple algorithms for independent component analysis and blind source separation of group (and single subject) functional magnetic resonance imaging data. GIFT works on MATLAB R2008a and higher. Many ICA algorithms were generously contributedby Dr. Andrzej Cichocki. These are also available in Dr. Cichocki's ICALAB toolbox. For any question or comments please contact Vince Calhoun (vcalhoun@gsu.edu) or Cyrus Eierud (ceierud@gsu.edu).
Please note that all the toolboxes in GIFT require only MATLAB and not dependent on additional MATLAB toolboxes like Image Processing, Signal Processing, etc. Basic GIFT analysis (without GUI) runs on MATLAB R13 and higher. GIFT GUI works on R2008a and higher.
GroupICAT - Download latest version by clicking the green code button on the upper right on this page and then clone the software using the link and the git clone command in your terminal. Current version of Group ICA. Requires MATLAB R2008a and higher.
Windows 64 - Compiled on Windows 64 bit OS and MATLAB R2020a. Please see read me text file for more details.
Linux-x86-64 - Compiled on Linux-x86-64 bit OS and MATLAB R2016b. Please see read me text file for more details.
fMRI Data - Example fMRI datais from a visuomotor paradigm.
Mancovan Sample Data - Sample data to use in mancovan analysis or temporal dfnc analysis.\
Complex GIFT - ICA is applied on complex fMRI data. Please follow the read me text file instructions for doing complex fMRI ICA analysis.\
If you have your data in BIDS format or you want to run GIFT under a cluster you may want to our GIFT BIDS-Apps gift-bids.
Figure 1. Main menu of GIFT |
Mancovan toolbox is based on the paper (E. Allen, E. Erhardt, E. Damaraju, W. Gruner, J. Segall, R. Silva, M. Havlicek, S. Rachakonda, J. Fries, R.Kalyanam, A. Michael, J. Turner, T. Eichele, S. Adelsheim, A. Bryan, J. R. Bustillo, V. P. Clark, S. Feldstein,F. M. Filbey, C. Ford, et al, 2011). This toolbox works on MATLAB versions greater than R2008a. Features used are subject component spatial maps, timecourses spectra and FNC correlations. Multivariate tests are done on the features to determine the significant covariates which are later used in the univariate tests on each feature. To invoke the toolbox, select “Mancovan� under “Toolboxes� menu (Figure 3.2). You could also invoke toolbox using mancovan_toolbox at the command prompt. Mancovan toolbox (Figure 3.38) is divided into four parts like create design matrix, setup features, run mancova and display.
NBiC toolbox is based on the 2020 publication "N-BiC: A Method for Multi-Component and Symptom Biclustering of Structural MRI Data: Application to Schizophrenia" (Md Abdur Rahaman , Jessica A. Turner, Cota Navin Gupta, Srinivas Rachakonda, Jiayu Chen , Jingyu Liu , Theo G. M. van Erp, Steven Potkin, Judith Ford, Daniel Mathalon, Hyo Jong Lee, Wenhao Jiang, Bryon A. Mueller, Ole Andreassen, Ingrid Agartz, Scott R. Sponheim , Andrew R. Mayer, Julia Stephen , Rex E. Jung, Jose Canive, Juan Bustillo, and Vince D. Calhoun). This toolbox works on MATLAB versions greater than R2008a. Click here for more info.
More information about about the GIFT version history is found at the following link: GIFT version history
Cite As
Calhoun, V. D., et al. “A Method for Making Group Inferences Using Independent Component Analysis of Functional MRI Data: Exploring the Visual System.” NeuroImage, 2001, pp. S88.
Du, Yuhui, et al. “NeuroMark: An Automated and Adaptive ICA Based Pipeline to Identify Reproducible FMRI Markers of Brain Disorders.” NeuroImage: Clinical, vol. 28, Elsevier BV, 2020, p. 102375, doi:10.1016/j.nicl.2020.102375.
MATLAB Release Compatibility
Platform Compatibility
Windows macOS LinuxCategories
- Sciences > Neuroscience > Human Brain Mapping > MRI >
Tags
Community Treasure Hunt
Find the treasures in MATLAB Central and discover how the community can help you!
Start Hunting!Discover Live Editor
Create scripts with code, output, and formatted text in a single executable document.
GroupICAT/icatb
GroupICAT/icatb/@gifti
GroupICAT/icatb/@gifti/private
GroupICAT/icatb/icatb_analysis_functions
GroupICAT/icatb/icatb_analysis_functions/icatb_algorithms
GroupICAT/icatb/icatb_analysis_functions/icatb_algorithms/icatb_semiblindInfomax
GroupICAT/icatb/icatb_batch_files
GroupICAT/icatb/icatb_display_functions
GroupICAT/icatb/icatb_helpManual
GroupICAT/icatb/icatb_helper_functions
GroupICAT/icatb/icatb_io_data_functions
GroupICAT/icatb/icatb_mancovan_files
GroupICAT/icatb/icatb_parallel_files
GroupICAT/icatb/icatb_scripts
GroupICAT/icatb/icatb_spm_files
GroupICAT/icatb/icatb_spm_files/@icatb_file_array
GroupICAT/icatb/icatb_spm_files/@icatb_file_array/private
GroupICAT/icatb/icatb_spm_files/@icatb_nifti
GroupICAT/icatb/icatb_spm_files/@icatb_nifti/private
GroupICAT/icatb/icatb_talairach_scripts
GroupICAT/icatb/icatb_templates
GroupICAT/icatb/toolbox/Graphical_Lasso
GroupICAT/icatb/toolbox/dynamic_coherence
GroupICAT/icatb/toolbox/eegiftv1.0c
GroupICAT/icatb/toolbox/eegiftv1.0c/icatb_eeg_batch_files
GroupICAT/icatb/toolbox/eegiftv1.0c/icatb_eeg_files
GroupICAT/icatb/toolbox/eegiftv1.0c/icatb_eeglabv6.0b_files
GroupICAT/icatb/toolbox/export_fig
GroupICAT/icatb/toolbox/icasso122
GroupICAT/icatb/toolbox/mancovan
GroupICAT/icatb/toolbox/mi
GroupICAT/icatb/toolbox/nbic
GroupICAT/icatb/toolbox/noisecloud
GroupICAT/icatb/toolbox/noisecloud/3rdparty
GroupICAT/icatb/toolbox/noisecloud/3rdparty/glmnet_matlab
GroupICAT/icatb/toolbox/noisecloud/prep
GroupICAT/icatb/toolbox/noisecloud/prep/label-good-bad-gui
GroupICAT/icatb/toolbox/noisecloud/scripts
Version | Published | Release Notes | |
---|---|---|---|
4.0.5.0 | See release notes for this release on GitHub: https://github.com/trendscenter/gift/releases/tag/v4.0.5.0
|
||
4.0.4.0 | See release notes for this release on GitHub: https://github.com/trendscenter/gift/releases/tag/v4.0.4.0 |
||
4.0.3.5 | See release notes for this release on GitHub: https://github.com/trendscenter/gift/releases/tag/v4.0.3.5 |
||
4.0.3.0 |