GECKO Toolbox

Version 3.2.1 (26.2 MB) by Eduard Kerkhoven
Toolbox for including enzyme constraints in a genome-scale model.
0.0
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188 Downloads
Updated 7 Jun 2024
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Cite As

Eduard Kerkhoven (2024). GECKO Toolbox (https://github.com/SysBioChalmers/GECKO/releases/tag/v3.2.1), GitHub. Retrieved .

Chen, Yu, et al. “Reconstruction, Simulation and Analysis of Enzyme-Constrained Metabolic Models Using GECKO Toolbox 3.0.” Nature Protocols, vol. 19, no. 3, Springer Science and Business Media LLC, Jan. 2024, pp. 629–67, doi:10.1038/s41596-023-00931-7.

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MATLAB Release Compatibility
Created with R2022a
Compatible with R2019b and later releases
Platform Compatibility
Windows macOS Linux
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src/geckomat/change_model

src/geckomat/gather_kcats

src/geckomat/get_enzyme_data

src/geckomat/kcat_sensitivity_analysis

src/geckomat/kcat_sensitivity_analysis/Bayesian

src/geckomat/limit_proteins

src/geckomat/model_adapter

src/geckomat/utilities

test/manual_tests

test/unit_tests

test/unit_tests/ecTestGEM

tutorials/full_ecModel

tutorials/full_ecModel/code

tutorials/light_ecModel

tutorials/light_ecModel/code

Version Published Release Notes
3.2.1

See release notes for this release on GitHub: https://github.com/SysBioChalmers/GECKO/releases/tag/v3.2.1
3.2.0

See release notes for this release on GitHub: https://github.com/SysBioChalmers/GECKO/releases/tag/v3.2.0
3.1.3

See release notes for this release on GitHub: https://github.com/SysBioChalmers/GECKO/releases/tag/v3.1.3
3.1.2.0

See release notes for this release on GitHub: https://github.com/SysBioChalmers/GECKO/releases/tag/v3.1.2
3.1.1.0

See release notes for this release on GitHub: https://github.com/SysBioChalmers/GECKO/releases/tag/v3.1.1
3.1.0.0

See release notes for this release on GitHub: https://github.com/SysBioChalmers/GECKO/releases/tag/v3.1.0
3.0.2.0

See release notes for this release on GitHub: https://github.com/SysBioChalmers/GECKO/releases/tag/v3.0.2
3.0.1

3.0.0.0

See release notes for this release on GitHub: https://github.com/SysBioChalmers/GECKO/releases/tag/v3.0.0
2.0.3.0

See release notes for this release on GitHub: https://github.com/SysBioChalmers/GECKO/releases/tag/v2.0.3
2.0.2.0

See release notes for this release on GitHub: https://github.com/SysBioChalmers/GECKO/releases/tag/v2.0.2
2.0.1.0

See release notes for this release on GitHub: https://github.com/SysBioChalmers/GECKO/releases/tag/v2.0.1
2.0.0.0

See release notes for this release on GitHub: https://github.com/SysBioChalmers/GECKO/releases/tag/v2.0.0
1.3.5.0

See release notes for this release on GitHub: https://github.com/SysBioChalmers/GECKO/releases/tag/v1.3.5
1.3.4.0

See release notes for this release on GitHub: https://github.com/SysBioChalmers/GECKO/releases/tag/v1.3.4
1.3.3.0

See release notes for this release on GitHub: https://github.com/SysBioChalmers/GECKO/releases/tag/v1.3.3
1.3.2.0

See release notes for this release on GitHub: https://github.com/SysBioChalmers/GECKO/releases/tag/v1.3.2
1.3.1.0

See release notes for this release on GitHub: https://github.com/SysBioChalmers/GECKO/releases/tag/v1.3.1
1.3.0.0

See release notes for this release on GitHub: https://github.com/SysBioChalmers/GECKO/releases/tag/v1.3.0
1.2.1.0

See release notes for this release on GitHub: https://github.com/SysBioChalmers/GECKO/releases/tag/v1.2.1
1.2.0.0

See release notes for this release on GitHub: https://github.com/SysBioChalmers/GECKO/releases/tag/v1.2.0
1.1.2.0

See release notes for this release on GitHub: https://github.com/SysBioChalmers/GECKO/releases/tag/v1.1.2
1.1.1.0

See release notes for this release on GitHub: https://github.com/SysBioChalmers/GECKO/releases/tag/v1.1.1
1.1.0.0

See release notes for this release on GitHub: https://github.com/SysBioChalmers/GECKO/releases/tag/v1.1.0
1.0.0.0

See release notes for this release on GitHub: https://github.com/SysBioChalmers/GECKO/releases/tag/v1.0
To view or report issues in this GitHub add-on, visit the GitHub Repository.
To view or report issues in this GitHub add-on, visit the GitHub Repository.