GECKO Toolbox

Toolbox for including enzyme constraints in a genome-scale model.
215 Downloads
Updated 15 Oct 2024

Cite As

Eduard Kerkhoven (2024). GECKO Toolbox (https://github.com/SysBioChalmers/GECKO/releases/tag/v3.2.2), GitHub. Retrieved .

Chen, Yu, et al. “Reconstruction, Simulation and Analysis of Enzyme-Constrained Metabolic Models Using GECKO Toolbox 3.0.” Nature Protocols, vol. 19, no. 3, Springer Science and Business Media LLC, Jan. 2024, pp. 629–67, doi:10.1038/s41596-023-00931-7.

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MATLAB Release Compatibility
Created with R2022a
Compatible with R2019b and later releases
Platform Compatibility
Windows macOS Linux
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src/geckomat/change_model

src/geckomat/gather_kcats

src/geckomat/get_enzyme_data

src/geckomat/kcat_sensitivity_analysis

src/geckomat/kcat_sensitivity_analysis/Bayesian

src/geckomat/limit_proteins

src/geckomat/model_adapter

src/geckomat/utilities

test/manual_tests

test/unit_tests

test/unit_tests/ecTestGEM

tutorials/full_ecModel

tutorials/full_ecModel/code

tutorials/light_ecModel

tutorials/light_ecModel/code

Version Published Release Notes
3.2.2

See release notes for this release on GitHub: https://github.com/SysBioChalmers/GECKO/releases/tag/v3.2.2

3.2.1

See release notes for this release on GitHub: https://github.com/SysBioChalmers/GECKO/releases/tag/v3.2.1

3.2.0

See release notes for this release on GitHub: https://github.com/SysBioChalmers/GECKO/releases/tag/v3.2.0

3.1.3

See release notes for this release on GitHub: https://github.com/SysBioChalmers/GECKO/releases/tag/v3.1.3

3.1.2.0

See release notes for this release on GitHub: https://github.com/SysBioChalmers/GECKO/releases/tag/v3.1.2

3.1.1.0

See release notes for this release on GitHub: https://github.com/SysBioChalmers/GECKO/releases/tag/v3.1.1

3.1.0.0

See release notes for this release on GitHub: https://github.com/SysBioChalmers/GECKO/releases/tag/v3.1.0

3.0.2.0

See release notes for this release on GitHub: https://github.com/SysBioChalmers/GECKO/releases/tag/v3.0.2

3.0.1

3.0.0.0

See release notes for this release on GitHub: https://github.com/SysBioChalmers/GECKO/releases/tag/v3.0.0

2.0.3.0

See release notes for this release on GitHub: https://github.com/SysBioChalmers/GECKO/releases/tag/v2.0.3

2.0.2.0

See release notes for this release on GitHub: https://github.com/SysBioChalmers/GECKO/releases/tag/v2.0.2

2.0.1.0

See release notes for this release on GitHub: https://github.com/SysBioChalmers/GECKO/releases/tag/v2.0.1

2.0.0.0

See release notes for this release on GitHub: https://github.com/SysBioChalmers/GECKO/releases/tag/v2.0.0

1.3.5.0

See release notes for this release on GitHub: https://github.com/SysBioChalmers/GECKO/releases/tag/v1.3.5

1.3.4.0

See release notes for this release on GitHub: https://github.com/SysBioChalmers/GECKO/releases/tag/v1.3.4

1.3.3.0

See release notes for this release on GitHub: https://github.com/SysBioChalmers/GECKO/releases/tag/v1.3.3

1.3.2.0

See release notes for this release on GitHub: https://github.com/SysBioChalmers/GECKO/releases/tag/v1.3.2

1.3.1.0

See release notes for this release on GitHub: https://github.com/SysBioChalmers/GECKO/releases/tag/v1.3.1

1.3.0.0

See release notes for this release on GitHub: https://github.com/SysBioChalmers/GECKO/releases/tag/v1.3.0

1.2.1.0

See release notes for this release on GitHub: https://github.com/SysBioChalmers/GECKO/releases/tag/v1.2.1

1.2.0.0

See release notes for this release on GitHub: https://github.com/SysBioChalmers/GECKO/releases/tag/v1.2.0

1.1.2.0

See release notes for this release on GitHub: https://github.com/SysBioChalmers/GECKO/releases/tag/v1.1.2

1.1.1.0

See release notes for this release on GitHub: https://github.com/SysBioChalmers/GECKO/releases/tag/v1.1.1

1.1.0.0

See release notes for this release on GitHub: https://github.com/SysBioChalmers/GECKO/releases/tag/v1.1.0

1.0.0.0

See release notes for this release on GitHub: https://github.com/SysBioChalmers/GECKO/releases/tag/v1.0

To view or report issues in this GitHub add-on, visit the GitHub Repository.
To view or report issues in this GitHub add-on, visit the GitHub Repository.