Bayesian parametric survival analysis with the fused lasso

Bayesian parametric survival analysis for proportional hazards regression.

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This toolbox implements a Bayesian parametric proportional hazards regression model for right-censored survival data (see also Royston and Parmar 2002). The underlying baseline hazard function is modelled via integrated splines to guarantee monotonicity. The Bayesian fused lasso prior distribution is used to control smoothness of the baseline hazard function estimate and to select important covariates. To obtain samples from the posterior distribution, we use Hamiltonian Monte Carlo in conjunction with the Proximal MCMC algorithm (Zhou et al. 2024). Usage examples are included (see example?.m).

Cite As

Statovic (2026). Bayesian parametric survival analysis with the fused lasso (https://www.mathworks.com/matlabcentral/fileexchange/168941-bayesian-parametric-survival-analysis-with-the-fused-lasso), MATLAB Central File Exchange. Retrieved .

Zhou, Xinkai, et al. “Proximal MCMC for Bayesian Inference of Constrained and Regularized Estimation.” The American Statistician, Informa UK Limited, Feb. 2024, pp. 1–12, doi:10.1080/00031305.2024.2308821.

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Royston, Patrick, and Mahesh K. B. Parmar. “Flexible Parametric Proportional‐Hazards and Proportional‐Odds Models for Censored Survival Data, with Application to Prognostic Modelling and Estimation of Treatment Effects.” Statistics in Medicine, vol. 21, no. 15, Wiley, July 2002, pp. 2175–97, doi:10.1002/sim.1203.

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General Information

MATLAB Release Compatibility

  • Compatible with any release

Platform Compatibility

  • Windows
  • macOS
  • Linux
Version Published Release Notes Action
1.0.0