Bayesian parametric survival analysis with the fused lasso

Version 1.0.0 (2.65 MB) by Statovic
Bayesian parametric survival analysis for proportional hazards regression.
15 Downloads
Updated 28 Jun 2024

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This toolbox implements a Bayesian parametric proportional hazards regression model for right-censored survival data (see also Royston and Parmar 2002). The underlying baseline hazard function is modelled via integrated splines to guarantee monotonicity. The Bayesian fused lasso prior distribution is used to control smoothness of the baseline hazard function estimate and to select important covariates. To obtain samples from the posterior distribution, we use Hamiltonian Monte Carlo in conjunction with the Proximal MCMC algorithm (Zhou et al. 2024). Usage examples are included (see example?.m).

Cite As

Statovic (2024). Bayesian parametric survival analysis with the fused lasso (https://www.mathworks.com/matlabcentral/fileexchange/168941-bayesian-parametric-survival-analysis-with-the-fused-lasso), MATLAB Central File Exchange. Retrieved .

Zhou, Xinkai, et al. “Proximal MCMC for Bayesian Inference of Constrained and Regularized Estimation.” The American Statistician, Informa UK Limited, Feb. 2024, pp. 1–12, doi:10.1080/00031305.2024.2308821.

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Royston, Patrick, and Mahesh K. B. Parmar. “Flexible Parametric Proportional‐Hazards and Proportional‐Odds Models for Censored Survival Data, with Application to Prognostic Modelling and Estimation of Treatment Effects.” Statistics in Medicine, vol. 21, no. 15, Wiley, July 2002, pp. 2175–97, doi:10.1002/sim.1203.

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MATLAB Release Compatibility
Created with R2024a
Compatible with any release
Platform Compatibility
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Version Published Release Notes
1.0.0