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NeuroMiner
Version 1.3.0 (57.7 MB) by
Nikolaos Koutsouleris
The official release version of NeuroMiner 1.3
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Cite As
Nikolaos Koutsouleris (2024). NeuroMiner (https://github.com/neurominer-git/NeuroMiner_1.3), GitHub. Retrieved .
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- allcomb
- ComputeMeanSDPerf
- compute_analytical_pvals
- cv_ExportModels
- cv_ExportModelsPrep
- genID
- getAlgoStr
- getD
- getModelNumDim
- getNMcolors
- get_featnames_VisModels
- h
- membership
- mli_orthviews
- NeuroMinerMCCMain
- nk_AdjBrainMask
- nk_ApplyLabelTransform
- nk_ApplyTrainedPreproc
- nk_BuildEnsembleEntropy
- nk_CalibrateProbabilities
- nk_CatNodes
- nk_cellcat
- nk_CheckComprFile
- nk_CheckContainsImagingData
- nk_CheckFieldStatus
- nk_CheckFileExist
- nk_CheckFixedFeatOrderStackInput
- nk_CheckLoadFile
- nk_CheckMatrixEmptyNonVarNonFinite
- nk_CheckNumCoresAvail
- nk_CheckNumParam
- nk_CheckSPMver
- nk_CheckW2Avail
- nk_CompareClass
- nk_CompareClassResample
- nk_CompatY
- nk_CompGridFreq
- nk_CompPlattProbOptimum
- nk_ComputeCVR
- nk_ComputeEnsembleCasePropagationProbability
- nk_ComputeMnMdPairWiseDiff
- nk_ComputeSVMPmap
- nk_ComputeTransNodePerformance
- nk_ConcatParamstr
- nk_ConcatSubgroupPredictions
- nk_ConvProbabilities
- nk_CopyY2Struct
- nk_CorrectPredTails
- nk_CountUniqueOccurences
- nk_CountUniques
- nk_CreateSubSets
- nk_CVGridSelector
- nk_CVpartition
- nk_DataLabel_config
- nk_DealWithNaNCases
- nk_DecideClassMem
- nk_DefineCaseListIntegrity
- nk_DefineCaseNames2
- nk_DefineFiles
- nk_DefineFusionModeParams
- nk_DefineGroups
- nk_DefineLabels
- nk_DefineLIBSVMfun
- nk_DefineMLParamStr
- nk_DefineModeflag
- nk_DetIfDimRefInPREPROC
- nk_DetIfTemplPreproc
- nk_DirSelector
- nk_EqualizeHisto
- nk_ExtractFeatures
- nk_ExtractID
- nk_ExtractPredictions
- nk_ExtrIndVol
- nk_FigSetup2
- nk_FileSelector
- nk_FormatNicely
- nk_FSreslice
- nk_GenClass
- nk_GenConfMatrix
- nk_GenerateNMFilePath
- nk_GenGridAct_batch
- nk_GenPermMatrix
- nk_GenTemplParam
- nk_GetAlgoWeightVec
- nk_GetAnalysisInfo
- nk_GetAnalysisStatus
- nk_GetCV2EnsembleDims
- nk_GetLabelDim
- nk_GetModelParams2
- nk_GetNMStatus
- nk_GetOOCVInfo
- nk_GetParamDescription2
- nk_GetPrimalW
- nk_GetScaleYAxisLabel
- nk_GetTestParam
- nk_GetVariateDescription
- nk_GridSearchEnsembleAdaBoost
- nk_ImagingInit
- nk_INDEPpartition
- nk_InitAnalysisPrep
- nk_Initialize
- nk_InitNMwindowColors
- nk_input
- nk_kurtosis
- nk_LabelTransform
- nk_LoadLinkedData
- nk_LOOpartition
- nk_mahalanobis
- nk_make
- nk_MakeCrossFolds
- nk_MakeDummyVariables
- nk_MakeFolds
- nk_MakeRVMTargetMatrix
- nk_ManageDataContainers
- nk_ManageNanCases
- nk_mapY2Struct
- nk_MatchID
- nk_MLOptimizerMeta
- nk_MLOptimizerPrep
- nk_MLOptimizer_ExtractDimMat
- nk_ModelComplexityParams
- nk_Move2OOCV
- nk_MultiBinBind
- nk_MultiClassAssessConfMatrix
- nk_MultiDecideDAG
- nk_MultiDecideErrorCorrOutCodes
- nk_MultiDecideHierarchOneVsOne
- nk_MultiDecideMaxWins
- nk_MultiDecideMaxWinsNegTiesOpt
- nk_MultiPerfComp
- nk_NMLogFileManager
- nk_OneVsAll
- nk_OneVsOne
- nk_OOCV
- nk_OOCVMeta
- nk_OOCVPrep
- nk_OOCVPrep
- nk_orthviews
- nk_PerfInitSpatial
- nk_PerfResampleImages
- nk_PermInd
- nk_PermPrep
- nk_PermX
- nk_PredictData
- nk_Prep4CV
- nk_PrepMLParams
- nk_PrepPreprocParams
- nk_PrintLogo
- nk_PrintWs
- nk_PTfromR
- nk_Range
- nk_ReadMaskIndVol
- nk_ReadVol2Vec
- nk_RemapData
- nk_RenormalizeScores
- nk_ReorderComponents
- nk_ResizeImg
- nk_ReturnActionParam
- nk_ReturnAtOptPos
- nk_ReturnEvalOperator
- nk_ReturnParam
- nk_ReturnParamChain
- nk_ReturnSubSpaces
- nk_SA
- nk_ScopeCellRetDummyFromTable
- nk_SelectAnalysis
- nk_SelectCovariateIndex
- nk_SelectOOCVdata
- nk_SelectVariateIndex
- nk_SetParamChain
- nk_SetupGlobalVariables
- nk_SetupGlobVarsForLIBSVM
- nk_skewness
- nk_smooth
- nk_SwapY_OOCV
- nk_ThreshImages
- nk_Threshold
- nk_ThreshWriteImg
- nk_UpdateRootPaths
- nk_Utilities
- nk_VisModels
- nk_VisModels
- nk_VisModelsPrep
- nk_VisModels_ExtraLabels
- nk_VisNonImg
- nk_VisSmooth
- nk_VisSV
- nk_VisXHelper
- nk_VisXPermHelper
- nk_VisXPermY
- nk_VisXWeight
- nk_VisXWeight
- nk_Vol2Vec
- nk_Write2Atlas
- nk_WriteVol
- nm
- percentile
- project2InputSpace
- ranking
- resample_image
- resize_img_useTemp_imcalc
- rotateticklabel
- Scale
- scale_matrix
- simulate_sampleSize
- splash
- strsplit
- UpdateCVDatamat
- update_NMstruct
FeatGen
- avrRank
- bootprocrust
- colAUC
- GetSalModeStr
- GetSalModeStrAlgo
- kNNm
- nk_AdaptiveThreshold2
- nk_AUCFeatRank
- nk_BhattacharyaFeatRank
- nk_BootSamp
- nk_CalcSpatConst
- nk_Cluster
- nk_ComputeCondEntropy
- nk_ComputeEntropy
- nk_CorrMat
- nk_DefineThresh
- nk_EstimKforMI
- nk_EstimKforMIPerm
- nk_ExtractClusterData
- nk_FeatGenEntropy
- nk_FeatSel_Cluster
- nk_FilterCondEntropy
- nk_FilterInfo
- nk_FScore
- nk_FScoreFeatRank
- nk_MI
- nk_MIBag
- nk_MutualInfo
- nk_PLS
- nk_PLSpredict
- nk_Procrustes
- nk_SmoothImage
- nk_SpatConst
- nm_discretize
- preprocessing
- randsample
- spear
- suggestBeta
FeatGen/FEAST
FeatGen/FEAST/FSToolbox
FeatGen/FEAST/MIToolbox
FeatGen/FEAST/MIToolbox/demonstration_algorithms
FeatGen/GFlip
FeatGen/IMRelief
- boldify1
- iDetect
- imreliefmain
- IMRelief_cost
- IMRelief_Sigmoid_FastImple
- IMRelief_Sigmoid_FastImple
- IMRelief_Sigmoid_FastImple
- IMRelief_Sigmoid_FastImple_Predict.m
- IMRelief_Sigmoid_FastImple_Predict2.m
- kNearestNeighbors
- nk_ImReliefVisCVGrid
- TestMe
FeatGen/MRMR
FeatGen/NNMF
FeatGen/RGS
FeatGen/RSS
FeatGen/SA
- NextSolution1
- NextSolution2
- NextSolution3
- nk_SimAnneal
- ObjectiveFunction1
- SA_feature_selection
- SA_feature_selection_1.m
FeatGen/SVM
FeatGen/Simba
- nk_simbaHelper
- nk_SimbaHelperGpu.m
- nk_SimbaLinearSigmoid
- nk_SimbaLinearSigmoid_gpu
- nk_SimbaMain
- simbamain
FeatGen/pnmf
JuSpace
- cv_apply_JuSpace
- cv_perfJuSpace
- get_featnames_JuSpace
- get_images_OSF
- JuSpace_config
- JuSpace_no_GUI_2D_faster
- removenan_my
- resize_image_JuSpace
MIToolbox-master/matlab
MIToolbox-master/matlab/demonstration_algorithms
Python
automation
cfiles
config
- cv_customPreproc_config
- cv_fastICA_config
- cv_Label_config
- cv_ROImeans_config
- nk_AskCalibUse_config
- nk_CheckCalibAvailMenu_config
- nk_CompatParams2.m
- nk_ConstructW_config
- nk_CostFun_config
- nk_CVpartition_config
- nk_DataIO3_SpaceDefImage_config
- nk_DataIO_config
- nk_DECTRE_config
- nk_DefineCovars_config
- nk_DefPREPROC_config
- nk_Devmap_config
- nk_DimRed_main_config
- nk_DiscSym_config
- nk_EnsembleStrategy2_config
- nk_Ensemble_config
- nk_EvalFunc_config
- nk_ExtDim_config
- nk_FEAST_config
- nk_FeatSel_StrCfg
- nk_Filter_config
- nk_Fusion_config
- nk_GA_config
- nk_GenCVdataMaster2
- nk_GenCVresultsMaster
- nk_GenDataMaster
- nk_GenPreprocMaster2
- nk_GenVISdataMaster
- nk_GetAnalModalInfo_config
- nk_Gflip_config
- nk_GLMNET_config
- nk_GreedySearch_config
- nk_Grid_config
- nk_GroupNorm_config
- nk_Impute_config
- nk_IMRelief_config
- nk_Kernel_config
- nk_LabelImpute_config
- nk_LabelMod_config
- nk_LIBLIN_config
- nk_LIBSVM_config
- nk_matLearn_BuildMenu_config
- nk_matLearn_config
- nk_matLearn_DefAlgoParams_config
- nk_matLearn_FindDefInParam_config
- nk_matLearn_getopts_config
- nk_matLearn_IO_config
- nk_MKLRVM_config
- nk_MLI_config
- nk_MLPERC_config
- nk_ModelExportPrep
- nk_ModelExport_config
- nk_Model_config
- nk_MRMR_config
- nk_Multi_config
- nk_OOCVDataIO_config
- nk_OOCV_config
- nk_PartialCorrelations_config
- nk_PFA_config
- nk_PLS_config
- nk_PolyKernel_config
- nk_Preprocess_StrCfg
- nk_Preproc_config
- nk_ProbalisticFea_config
- nk_Prune_config
- nk_PSO_config
- nk_Rank_config
- nk_RegulFunc_config
- nk_Remvarcomp_config
- nk_RFE_config
- nk_RGS_config
- nk_RGS_config
- nk_ROBSVM_config
- nk_SavingOptions_config
- nk_SA_config
- nk_Scale_config
- nk_SEQOPT_config
- nk_SetupIMReliefParams_config
- nk_Simba_config
- nk_Simba_config
- nk_SpatialOP_config
- nk_Spatial_config
- nk_Stacking_config
- nk_Standardize_config
- nk_SubgroupOperation_config
- nk_SubSpaceStrategy_config
- nk_SVM_config
- nk_Synth_config
- nk_TrainClass_config
- nk_Unitnorm_config
- nk_Vis_config
- nk_WAction_config
- nk_WBLCOX_config
- nk_Wrapper_config
config/data_import
- CalcGlobals
- CheckGlobals
- CheckImageInfoConsistency
- CheckLabel
- CheckReadyStatus
- CheckTabFile
- DataIO
- DefineLabels
- DeleteAll
- DeleteCovarsInNM
- DeleteModalityInNM
- GenerateMessageEntry
- ReadNifti
- ReadSurf
- ReadTabular
- ReadVectors
- RetrieveImageInfo
- SetFileFilter
- SPMimport
- TransferModality2NM
ensemble
- nk_Ambiguity
- nk_BuildEnsemble
- nk_CVMax
- nk_Diversity
- nk_DiversityKappa
- nk_DiversityMax
- nk_EDMin
- nk_EnsPerf
- nk_EntropMax
- nk_Entropy
- nk_FilterCVMax
- nk_Lobag
- nk_LobagMulti
- nk_MultiCVMax
- nk_MultiDiversityMax
- nk_MultiEDMin
- nk_MultiEnsPerf
- nk_MultiEntropMax
- nk_RegAmbig
- nk_SignBasedConsistency
- nk_SignBasedConsistencySignificance
- nk_SignBasedConsistencySignificanceTwoSided
- nk_SignBasedConsistencyTwoSided
- nk_ThrowCoin
extra
graphs
graphs/graph_kernels/labeled
graphs/graph_kernels/svm
graphs/graph_kernels/unlabeled
graphs/graph_kernels/unlabeled/allgraphlets
graphs/graph_kernels/unlabeled/connectedgraphlets
graphs/graph_kernels/unlabeled/samplinggraphlets
- gestkernel3
- gestkernel4
- gestkernel5
- Permutationmatrix3
- Permutationmatrix4
- Permutationmatrix5
- samplesize
graphs/graph_preproc
- array_to_graph
- array_to_graph2
- cal_mi
- cv_apply_sparsity_thres
- cv_ExtGraphConstr_config
- cv_graphConstruction_config
- cv_graphMetrics_config
- cv_graphSparsity_config
- cv_graph_constructionKLS
- cv_graph_constructionREFPLUSP
- cv_graph_PerfGraphConstruction
- cv_graph_PerfGraphMetrics
- cv_graph_PerfSparsityThres
- featSelectT
- GraphKernel_matrixInput
- MutualInformation
- sparseCellArray
- WLKernel_rowsInput
- WLKernel_setsInput
- WL_with_prior_sparsityThres_Ttest
- WL_with_prior_sparsity_thresholding
graphs/graph_preproc/BCT
graphs/graph_preproc/BCT/2019_03_03_BCT
- adjacency_plot_und
- agreement
- agreement_weighted
- align_matrices
- assortativity_bin
- assortativity_wei
- backbone_wu
- betweenness_bin
- betweenness_wei
- breadth
- breadthdist
- charpath
- clique_communities
- clustering_coef_bd
- clustering_coef_bu
- clustering_coef_wd
- clustering_coef_wu
- clustering_coef_wu_sign
- community_louvain
- consensus_und
- core_periphery_dir
- cycprob
- degrees_dir
- degrees_und
- density_dir
- density_und
- diffusion_efficiency
- distance_bin
- distance_wei
- distance_wei_floyd
- diversity_coef_sign
- edge_betweenness_bin
- edge_betweenness_wei
- edge_nei_overlap_bd
- edge_nei_overlap_bu
- efficiency_bin
- efficiency_wei
- eigenvector_centrality_und
- erange
- evaluate_generative_model
- findpaths
- findwalks
- find_motif34
- flow_coef_bd
- gateway_coef_sign
- generate_fc
- generative_model
- get_components
- grid_communities
- gtom
- jdegree
- kcoreness_centrality_bd
- kcoreness_centrality_bu
- kcore_bd
- kcore_bu
- latmio_dir
- latmio_dir_connected
- latmio_und
- latmio_und_connected
- link_communities
- local_assortativity_wu_sign
- makeevenCIJ
- makefractalCIJ
- makelatticeCIJ
- makerandCIJdegreesfixed
- makerandCIJ_dir
- makerandCIJ_und
- makeringlatticeCIJ
- maketoeplitzCIJ
- make_motif34lib
- matching_ind
- matching_ind_und
- mean_first_passage_time
- mleme_constraint_model
- modularity_dir
- modularity_und
- module_degree_zscore
- motif3funct_bin
- motif3funct_wei
- motif3struct_bin
- motif3struct_wei
- motif4funct_bin
- motif4funct_wei
- motif4struct_bin
- motif4struct_wei
- navigation_wu
- null_model_dir_sign
- null_model_und_sign
- pagerank_centrality
- participation_coef
- participation_coef_sign
- partition_distance
- path_transitivity
- predict_fc
- quasi_idempotence
- randmio_dir
- randmio_dir_connected
- randmio_dir_signed
- randmio_und
- randmio_und_connected
- randmio_und_signed
- randomizer_bin_und
- randomize_graph_partial_und
- reachdist
- rentian_scaling_2d
- rentian_scaling_3d
- reorderMAT
- reorder_matrix
- reorder_mod
- resource_efficiency_bin
- retrieve_shortest_path
- rich_club_bd
- rich_club_bu
- rich_club_wd
- rich_club_wu
- rout_efficiency
- score_wu
- search_information
- strengths_dir
- strengths_und
- strengths_und_sign
- subgraph_centrality
- threshold_absolute
- threshold_proportional
- transitivity_bd
- transitivity_bu
- transitivity_wd
- transitivity_wu
- weight_conversion
- writetoPAJ
graphs/graph_preproc/BCT/2019_03_03_BCT/data_and_demos
graphs/graph_preproc/SmallWorldNess-master
- clustering_coef_bu
- clusttriang
- Computing_And_Testing_S_On_Data_Network.m
- ER_Expected_L_C
- NullModel_L_C
- random_graph
- rand_pair
- reachdist
- SanalyticER
- small_world_ness
- SsampleER
graphs/graph_preproc/kde
graphs/graph_preproc/kldiv
graphs/graph_preproc/mi
- condentropy
- condmutualinfo
- demo_mi.m
- entropy
- jointentropy
- makeosmex.m
- mergemultivariables
- mutualinfo
graphs/graph_preproc/minf
gridsearch
- nk_ComputeEnsembleProbability
- nk_ComputeRegulFunction
- nk_FindGridOpt
- nk_GridOptimumSelector.m
- nk_GridSearchHelper
- nk_MLOptimizer
- nk_MLOptimizer_main
- nk_MLOptimizer_ParamAnnealer
- nk_MLOptimizer_ParamAnnealer_CodeTemplate.m
- nk_MLOptimizer_ParamCycler
- nk_MLOptimizer_SimulatedAnnealing
- nk_MLOptimizer_Wrapper
- nk_MLOptimizer_WrapperMulti
- nk_MLOpt_SA_accept_solution
- nk_MLOpt_SA_generate_neighbor
- nk_MLOpt_SA_initialize_random_hyperparameters
- nk_MLOpt_SA_objective_function
- nk_ModelNodeSelector
gui
- binarize_regr
- create_visdata_tables
- crossanalyse
- determine_probflag
- display_calibcurve
- display_classcomparison_matrix
- display_classplot
- display_classplot_oocv
- display_comparator
- display_contigmat
- display_contigmat_app
- display_contigplot
- display_dcacurve
- display_main
- display_main_app
- display_modelperf
- display_modelperf_bagged
- display_multiclassplot
- display_piecharts
- display_regrplot
- display_regrplot_app
- display_regrplot_oocv_labels_unknown
- display_roc
- display_seqopt_perf
- display_SubParam
- display_tablegenerator
- display_visual
- display_writetable
- dsxy2figxy
- export_features
- export_performance
- export_scores
- extract_subparam_performance
- get_oocvind
- imagingMLI
- load_analysis
- load_GDdims
- load_modal
- load_OOCV
- load_popupmenu1
- load_selAnalysis
- load_selCase
- load_selCVoocv
- load_selLabel
- load_selModality
- load_selModelMeasures
- load_selOneVsAll_Info
- load_selPager
- load_selSubParams
- load_selVisMeas2
- load_selYAxis
- nk_ItemSelector
- nk_ItemSelectorApp
- nk_ItemSelector_App_exported
- nk_main
- nk_OOCVDataIO
- nk_PrintResults2
- nk_results
- plotshaded
- polyparci
- printvis_ranked_cross_binary
- print_figure
- sel_onevsone
- set_panel_visibility
- set_SubInd
- set_visibility
- switch_analysis
- tbl2file
gui/export_fig
- append_pdfs
- copyfig
- crop_borders
- eps2pdf
- export_fig
- fix_lines
- ghostscript
- im2gif
- isolate_axes
- pdf2eps
- pdftops
- print2array
- print2eps
- read_write_entire_textfile
- user_string
- using_hg2
gui/export_fig/export_fig-master
- append_pdfs
- copyfig
- crop_borders
- eps2pdf
- export_fig
- fix_lines
- ghostscript
- im2gif
- isolate_axes
- pdf2eps
- pdftops
- print2array
- print2eps
- read_write_entire_textfile
- user_string
- using_hg2
hpc
- nk_GenGridAct_batch
- nk_MLInterpreter_batch
- nk_MLOptimizer_batch
- nk_MLOptimizer_batch
- nk_OOCV_batch
- nk_Preprocess_batch
- nk_VisModels_batch
interpretable
- barMLI
- barMLI
- barShapley
- CARE_barMLI
- get_dimsizes_MLI
- make_default_MLI_struct
- nk_CompVectorFromOSH2X
- nk_CreateData4MLInterpreter
- nk_MapModelPredictions
- nk_MLInterpreter
- nk_MLInterpreterPrep
- nk_SparseMaskObserv
- nm_shapley
interpretable/shapley
preproc
- act_impute
- apply_binning
- create_binary_labels
- cv_compute_ROImeans
- cv_icaHarmonize
- cv_perfCustomPreproc
- cv_PerfICA
- cv_perfROImeans
- cv_TestCustomPreproc
- fastICA_testing.m
- larsen
- nk_AddParam
- nk_AdjForCovarsUsingLocalModels
- nk_AdjForCovarsUsingPCA
- nk_AdjustData
- nk_AlignPCAModels
- nk_Check4LabelInteraction
- nk_CreatePreprocTemplate
- nk_ExtractCovs
- nk_GenPreML
- nk_GenPreprocSequence
- nk_MultiCentIntensNorm
- nk_MultiCentIntensNorm2
- nk_Normalize2Mean
- nk_NumberCmdStr
- nk_ParamReplicator
- nk_PartialCorrelationsObj
- nk_PerfADASYN
- nk_PerfAdjForCovarsUsingPCAObj
- nk_PerfANOVAObj
- nk_PerfANOVAObjNew
- nk_PerfANOVAObjOld
- nk_PerfCommonFeatExtraction
- nk_PerfCompConnectivity
- nk_PerfDevMapObj
- nk_PerfDiscretizeObj
- nk_PerfElimZeroObj
- nk_PerfExtDimObj
- nk_PerfFeatRankObj
- nk_PerfICA
- nk_PerfImputeLabelObj
- nk_PerfImputeObj
- nk_PerfNormObj
- nk_PerfPLSObj
- nk_PerfPreprocess
- nk_PerfPreprocessMeta
- nk_PerfPreprocessSpatial
- nk_PerfPreprocessSpatial
- nk_PerfRedObj
- nk_PerfRemMeanDiffObj
- nk_PerfRemMeanDiffObjOld
- nk_PerfScaleObj
- nk_PerfSpatFilt
- nk_PerfStandardizeObj
- nk_PerfUnitNormObj
- nk_PerfWActObj
- nk_PerfZeroOut
- nk_PreprocDataForEval
- nk_PreprocessPrep
- nk_Regress
- nk_Scale
- nk_ScaleData
- nk_SmoothMask
- nk_SortComponents
- nk_SpatFilt
- nk_TestPerfCompConnectivity
- nk_WeightData
- PerfDiscretizeObj
- PerfSymbolizeObj
- RemoveDisparateImpact
- SeqkNN
- SeqkNNv2
- spca
preproc/FastICA_25
- Contents.m
- demosig
- dispsig
- fastica
- fasticag
- fpica
- gui_adv
- gui_advc
- gui_cb
- gui_cg
- gui_help
- gui_l
- gui_lc
- gui_s
- gui_sc
- icaplot
- pcamat
- remmean
- whitenv
preproc/NMF_Library
- demo
- demo_face
- nk_NMFbase
- nmflibrary_version
- run_me_first.m
- test_nmf_base.m
- test_nmf_online
- test_seminmf
preproc/NMF_Library/auxiliary
- add_outlier
- add_outlier_new
- calc_mse
- calc_nls_nmf
- calc_psnr
- colsum_L_one
- constructW
- data_normalization
- euc_dist
- eval_clustering_accuracy
- generate_syntheticdata
- get_nmf_default_options
- g_lambda
- load_dataset
- mergeOptions
- nesterov_mnls
- nesterov_mnls_general
- nmf_cost
- normalization
- normalize_H
- normalize_W
- projection_mnls
- projection_precon_mnls
- projfunc
- rowsum_R_one
- set_disp_frequency
- store_nmf_infos
- update_alpha
preproc/NMF_Library/auxiliary/clustering_evaluator
- calc_nmi
- calc_purity
- calc_purity_f
- cal_entropy
- count_occurrence
- MutualInfo
- nmi_nbs
- nmi_onmf
- purity
- purity_f
preproc/NMF_Library/auxiliary/distribution
preproc/NMF_Library/auxiliary/initialization
preproc/NMF_Library/auxiliary/k-means
preproc/NMF_Library/auxiliary/similarity_matrix
preproc/NMF_Library/plotter
preproc/NMF_Library/plotter/plot_dictionary
preproc/NMF_Library/solver/3rd_party/anls
preproc/NMF_Library/solver/3rd_party/gnmf
preproc/NMF_Library/solver/3rd_party/pgd
preproc/NMF_Library/solver/3rd_party/sdnmf
preproc/NMF_Library/solver/base
preproc/NMF_Library/solver/nenmf
preproc/NMF_Library/solver/online
preproc/NMF_Library/solver/orthogonal
preproc/NMF_Library/solver/probabilistic
preproc/NMF_Library/solver/robust
preproc/NMF_Library/solver/semi_nmf
preproc/NMF_Library/solver/sparse
- nmf_sc
- nmf_sparse_mu
- nmf_sparse_mu_v
- ns_nmf
- sparse_nmf
- test_nsnmf.m
- test_sparse_nmf.m
- test_sparse_nmf_org.m
preproc/NMF_Library/solver/symm
preproc/NMF_Library/test
- comp_nmf_base_algorithms
- comp_nmf_online_algorithms
- comp_nmf_online_algorithms_test
- comp_nmf_robust_algorithms
- demo_face_online
- demo_face_with_outlier_online
- test_clustering_gnmf_sdnmf.m
preproc/NMF_Soteiras
- AUtoPhysicalUnits
- calcRecError.m
- calculateComponentWeightedAverageNIFTI
- clustering_adjustedRand_fast
- evaluateReproducibility
- Hungarian
- NNDSVD
- opnmf
- opnmf_mem
- randpca
preproc/NeNMF
preproc/SparsePLS
preproc/combat
preproc/drrobust
- adjustedboxplot
- adjustedoutlyingness
- adm
- agnes
- bagplot
- bannerplot
- cda
- cdq
- chi2inv
- chiqqplot
- clara
- classSVD
- clusplot
- common_size
- cpca
- cpcr
- csimca
- csimpls
- cvMcd
- cvRobpca
- cvRpcr
- cvRsimpls
- daisy
- daplot
- ddplot
- diana
- distplot
- ellipsplot
- extractmcdregres
- fanny
- gamcdf
- gampdf
- greatsort
- halfspacedepth
- hl
- kernelEVD
- L1median
- lmc
- lsscatter
- ltsregres
- madc
- mahalanobis
- makeplot
- mc
- mcdcov
- mcdregres
- mcenter
- mlochuber
- mloclogist
- mlr
- mona
- mscalelogist
- nm_gamcdf
- nm_gaminv
- norminv
- normqqplot
- ols
- pam
- plotnumbers
- predict
- putlabel
- qn
- qnm
- randomset
- rapca
- rda
- regresdiagplot
- regresdiagplot3d
- removal
- removeObsMcd
- removeObsRobpca
- residualplot
- rmc
- robpca
- robpcaregres
- robstd
- rpcr
- rrmse
- rsimca
- rsimpls
- rsquared
- rstep
- scorediagplot
- screeplot
- silhouetteplot
- simcaplot
- stdnormal_inv
- tree
- twopoints
- unimcd
- uniran
- updatecov
- weightmecov
preproc/drtoolbox
- compute_mapping
- Contents.m
- drgui
- fast_tsne
- generate_data
- intrinsic_dim
- mexall
- out_of_sample
- out_of_sample_est
- prewhiten
- reconstruction_error
- reconstruct_data
- test_toolbox
preproc/drtoolbox/techniques
- autoencoder_ea
- backprop
- backprop_gradient
- cca
- cfa
- cg_update
- charting
- checkgrad
- combn
- components
- compute_recon_err
- csdp
- d2p
- diffusion_maps
- dijk
- dijkstra
- em_pca
- fa
- fastmvu
- find_nn
- find_nn_adaptive
- gda
- gplvm
- gplvm_grad
- gram
- hillclimber2c
- hill_obj
- hlle
- infermfa
- isomap
- jdqr
- jdqz
- kernel_function
- kernel_pca
- L2_distance
- landmark_isomap
- laplacian_eigen
- lda
- llc
- lle
- lle_allcomp
- lltsa
- lmnn
- lmvu
- lpp
- ltsa
- mcml
- mcml_grad
- mds
- mgs
- minimize
- mppca
- mvu_x
- mvu_x_grad
- nca
- nca_lin_grad
- nk_tsne
- npe
- pca
- readsol
- reconstruction_derivative
- recon_data_from_autoenc
- recon_data_from_autoenc2
- roll_out
- run_data_through_autoenc
- run_data_through_network
- run_llc
- sammon
- sdecca2
- sne
- sparse_nn
- spe
- sym_sne
- train_autoencoder
- train_deep_autoenc
- train_grbm
- train_lin_rbm
- train_rbm
- tsne
- tsne_d
- tsne_p
- welcome
- writesdpa
- x2p
preproc/drtools
- constructKernel
- constructW
- EuDist2
- IsoP
- KLPP
- KPCA
- KSR
- KSR_caller
- LaplacianScore
- lars
- LGE
- LPP
- LSDA
- lsqr2
- MMP
- nnmf_lin
- NPE
- OLGE
- OLPP
- PCA
- SDA
- SDA_MR
- SR
- SR_caller
- TensorLGE
- TensorLPP
preproc/mi
- condentropy
- condmutualinfo
- demo_mi.m
- entropy
- jointentropy
- makeosmex.m
- mergemultivariables
- mrmr_mibase_d
- mrmr_mid_d
- mrmr_miq_d
- mutualinfo