This package includes a variety of scripts for analysis of microscopy images, using the SAFIRE screening platform. This package is useful for analyzing high-content screens of intracellular bacteria. The package inputs images from a CV1000 microscope, segments host cells, and quantifies intracellular bacteria. It applies B-score normalization to the resulting data.
Abigail Reens (2020). SAFIRE_CV1000 (https://www.mathworks.com/matlabcentral/fileexchange/67277-safire_cv1000), MATLAB Central File Exchange. Retrieved .