Updated 11 Jul 2019
See the preprint A computational toolbox and step-by-step tutorial for the analysis of neuronal population dynamics in calcium imaging data by Romano et al for tutorial and full description (doi.org/10.1101/103879).
The toolbox is demonstrated in the paper An integrated calcium imaging processing toolbox for the analysis of neuronal population dynamics by Romano et al (doi.org/10.1371/journal.pcbi.1005526).
Developed at Zebrafish Neuroethology lab (http://www.zebrain.biologie.ens.fr/)
Romano, Sebastián A., et al. “An Integrated Calcium Imaging Processing Toolbox for the Analysis of Neuronal Population Dynamics.” PLOS Computational Biology, edited by Lyle J. Graham, vol. 13, no. 6, Public Library of Science (PLoS), June 2017, p. e1005526, doi:10.1371/journal.pcbi.1005526.