MIN1PIPE

Version 1.0.2 (25.3 MB) by Jinghao Lu

A MINiscope 1-photon-based Calcium Imaging Signal Extraction PIPEline.

https://github.com/JinghaoLu/MIN1PIPE

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Updated 27 Jul 2022

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A MINiscope 1-photon-based Calcium Imaging Signal Extraction PIPEline.

MIN1PIPE is a fully automatic, Matlab-based toolbox, solving the full range problems in 1-photon calcium imaging in one package: data enhancement → movement morrection → signal extraction. It requires minimal parameter-tuning and integrates the semi-auto options. Each inidividual module can also be easily adapted for the 2-photon imaging setting.

Cite As

Jinghao Lu (2024). MIN1PIPE (https://github.com/JinghaoLu/MIN1PIPE), GitHub. Retrieved April 19, 2024.

Lu, Jinghao, et al. “MIN1PIPE: A Miniscope 1-Photon-Based Calcium Imaging Signal Extraction Pipeline.” Cell Reports, vol. 23, no. 12, Elsevier BV, June 2018, pp. 3673–84, doi:10.1016/j.celrep.2018.05.062.

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MATLAB Release Compatibility

Created with R2018a

Compatible with R2018a to R2019a

Platform Compatibility

Windows macOS Linux

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utilities/CNMF

utilities/RNN

utilities/elements

utilities/movement_correction

utilities/postprocess

Versions that use the GitHub default branch cannot be downloaded

Version	Published	Release Notes
1.0.2	27 Jul 2022	up-to-date git version
1.0.1	27 Jul 2022	Full version
1.0.0	21 Jul 2019

To view or report issues in this GitHub add-on, visit the GitHub Repository.

MLA	Lu, Jinghao, et al. “MIN1PIPE: A Miniscope 1-Photon-Based Calcium Imaging Signal Extraction Pipeline.” Cell Reports, vol. 23, no. 12, Elsevier BV, June 2018, pp. 3673–84, doi:10.1016/j.celrep.2018.05.062.
APA	Lu, J., Li, C., Singh-Alvarado, J., Zhou, Z. C., Fröhlich, F., Mooney, R., & Wang, F. (2018). MIN1PIPE: A Miniscope 1-Photon-Based Calcium Imaging Signal Extraction Pipeline. Cell Reports, 23(12), 3673–3684. Elsevier BV. Retrieved from https://doi.org/10.1016%2Fj.celrep.2018.05.062
BibTeX	@article{Lu_2018, doi = {10.1016/j.celrep.2018.05.062}, url = {https://doi.org/10.1016%2Fj.celrep.2018.05.062}, year = 2018, month = {jun}, publisher = {Elsevier {BV}}, volume = {23}, number = {12}, pages = {3673--3684}, author = {Jinghao Lu and Chunyuan Li and Jonnathan Singh-Alvarado and Zhe Charles Zhou and Flavio Fröhlich and Richard Mooney and Fan Wang}, title = {{MIN}1PIPE: A Miniscope 1-Photon-Based Calcium Imaging Signal Extraction Pipeline}, journal = {Cell Reports} }