Homer3

version 1.52.0 (71.5 MB) by David Boas
Toolbox for analysis and visualization of fNIRS data

222 Downloads

Updated 23 Sep 2022

From GitHub

View License on GitHub

Homer3

Homer3

Homer3 is a open source MATLAB application used for analyzing fNIRS data to obtain estimates and maps of brain activation. It is a continuation of the work on the well-established HOMER2 software which itself evolved since the early 1990s, first as the Photon Migration Imaging Toolbox, then as HOMER.

Homer3 is developed and maintained by the Boston University Neurophotonics Center.

To cite Homer3 in your research:

Huppert, T., Diamond, S., Franceschini, M., Boas, D. (2009). HomER: a review of time-series analysis methods for near-infrared spectroscopy of the brain. Applied optics 48(10). https://dx.doi.org/10.1364/ao.48.00d280

Installation

Homer3 is composed only of MATLAB scripts, so the installation process for MATLAB users is as simple as downloading the code.

Get the latest release of Homer3

Getting started with Homer3

Note that cloning the repository or using the Download .zip button on the repository webpage WILL NOT download the submodule libraries that are a part of Homer3. Without these, the application will not run. These submodules must be downloaded manually from their respective repositories and placed in the \Homer3 folder.

Support

Support for users of Homer3 is available via the Homer3 & AtlasViewer community forum hosted on openfnirs.org. This forum is for questions about how to use Homer3.

To report a bug or suggest a feature, please create an issue here on GitHub.

Documentation

Homer3 documentation is hosted via the GitHub wiki and is a work in progress.

Contributing to Homer3

We welcome contributions to Homer3 from the fNIRS community. See CONTRIBUTING.md for development guidelines and WORKFLOW.md for a walkthrough of the cloning and version control procedures recommended for development.

License

Homer3 is BSD licensed, but we ask that you cite the original publication in your research.

Cite As

Huppert, T., Diamond, S., Franceschini, M., Boas, D. (2009). HomER: a review of time-series analysis methods for near-infrared spectroscopy of the brain. Applied optics 48(10). https://dx.doi.org/10.1364/ao.48.00d280

MATLAB Release Compatibility
Created with R2017b
Compatible with R2017b to R2021a
Platform Compatibility
Windows macOS Linux

Community Treasure Hunt

Find the treasures in MATLAB Central and discover how the community can help you!

Start Hunting!

DataTree

DataTree/AcquiredData

DataTree/AcquiredData/DataFiles

DataTree/AcquiredData/DataFiles/Hdf5

DataTree/AcquiredData/Nirs

DataTree/AcquiredData/Snirf

DataTree/AcquiredData/Snirf/Examples

DataTree/ProcStream

FuncRegistry

FuncRegistry/UserFunctions

FuncRegistry/UserFunctions/Archive

FuncRegistry/UserFunctions/Sim

FuncRegistry/UserFunctions/tcca_glm

Install

MainGUI

PlotProbeGUI

ProcStreamEditGUI

PvaluesDisplayGUI

StimEditGUI

UnitTests

UnitTests/Example_RunFuncOffline

Utils

Utils/Shared

Utils/Shared/namespace

Utils/iWLS

Utils/jsonlab

Utils/jsonlab/examples

Utils/jsonlab/test

Utils/submodules

To view or report issues in this GitHub add-on, visit the GitHub Repository.
To view or report issues in this GitHub add-on, visit the GitHub Repository.