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Paolo Binetti


19 total contributions since 2016

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Question


Faster alternative to containers.Map
Profiling a script (attached, along with a sample input data file), I have found that looking up a Map generated with containers...

1 month ago | 1 answer | 0

1

answer

Question


Speeding up dynamic programming code
Is there a way to speed up this piece of code implementing a dynamic programming algorithm? % sample input v = repmat('C...

4 months ago | 0 answers | 0

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answers

Question


Count common elements of two vectors, including repeats
I would like to count the common elements of two vectors a and b of integers, including repeats. For example, for: a = [9 1...

6 months ago | 1 answer | 0

1

answer

Question


Generate neighbors of a string
I need to generate a cell array (or char array) containing all d-neighbors of a string of lenght k. This means all the k-long st...

6 months ago | 1 answer | 0

1

answer

Question


Extract data from a non-rectangular text file, efficiently
In spite of going through Matlab help and several attempts, I still do not get how to use "textscan" or other relevant functions...

8 months ago | 1 answer | 0

1

answer

Question


How to reshape two cell arrays of strings into a cell array of cell arrays
Is there a neat way to vectorize the for-loop below? n_nodes = 2^(20-1); nodes = cellstr(dec2bin(0:n_nodes-1))'; ...

8 months ago | 2 answers | 0

2

answers

Question


Reading and processing data from text file to matlab variable quickly
I use the following code to read data from a text file and process it into two cell arrays, and it works, but can it be done fas...

8 months ago | 1 answer | 0

1

answer

Question


Vectorizing a structure assignment
Is vectorizing this for-loop possible and faster? nodes = cellstr(['GAA'; 'AACAG'; 'AAG'; 'AT'; 'ACA'; 'ACCGTTA';]); % samp...

8 months ago | 1 answer | 0

1

answer

Question


Vectorizing multiple string comparison
Is there a way to significantly speed up this loop, perhaps by vectorizing it? Inputs in attachment. I do not have a Matlab vers...

9 months ago | 2 answers | 0

2

answers

Question


Generating a vector containing the sizes of all cells of a cell array, along a specific dimension
Is there a way to vectorize this? (I tried with "cellfun", but did not succeed). for i = 1:numel(a) s(i) = size(a{i}...

9 months ago | 2 answers | 0

2

answers

Question


How to read a text file into a char array
This is probably trivial, but I have not found an easy way to convert a text file of n lines and m columns (sample attached) int...

9 months ago | 1 answer | 0

1

answer

Question


Improving efficiency of a char array function
I have built a function to be run 100000 times in a loop. Its input, "motifs", is a full 20x15 char array, containing only four ...

10 months ago | 2 answers | 0

2

answers

Question


How to efficiently generate a random integer within a range from an arbitrary probability distribution
I need to generate a random integer within a range from an arbitrary probability distribution, within a loop of 100000 iteration...

10 months ago | 2 answers | 0

2

answers

Question


How to efficiently generate a new array by indexing an array with another array
Is there a faster way to implement this loop, maybe vectorizing it? for j = 1:m C(:,j) = B(A(:,j,k),j); end wh...

10 months ago | 1 answer | 0

1

answer

Question


How to vectorize strfind
Is it possible to use strfind in a vectorized way? Suppose I want to get find not just one pattern inside a string, but several ...

10 months ago | 1 answer | 0

1

answer

Question


Converting a text file into strings and integers
I have .txt input files with a very simple structure, of which I attach an example. I want to convert its content in strings and...

10 months ago | 1 answer | 0

1

answer

Question


Replacing characters with integers in a very long string
I have a string of a few millions characters, want to replace it with a vector of integers according to simple rules, such as 'C...

10 months ago | 1 answer | 0

1

answer

Question


Given a very long string, replace chars with numbers and obtain cumulative sum vector
As input I have a vector of a few million char, which can be 'A', 'C', 'G', 'T'. The vector is called sequence. As output I w...

10 months ago | 3 answers | 0

3

answers

Question


How to vectorize a specific for-loop
I am trying to vectorize the for-loop hereafter. Would you have any hint? Thank you for i = 1 : numel(text)-k+1 % "text" i...

11 months ago | 2 answers | 1

2

answers