Answered

Handling incorrect parameter values in sbiofit and sbiofitmixed

Hello Czakó, Unfortunately, it is currently not possible to stop model simulations in SimBiology programatically. A better erro...

Handling incorrect parameter values in sbiofit and sbiofitmixed

Hello Czakó, Unfortunately, it is currently not possible to stop model simulations in SimBiology programatically. A better erro...

2 years ago | 0

| accepted

Answered

Combine two models in simbiology, where one of them is a species.

Hi Sudharsana, It sounds like the copy-paste tool in the graphical user interface for SimBiology could help in your case. To op...

Combine two models in simbiology, where one of them is a species.

Hi Sudharsana, It sounds like the copy-paste tool in the graphical user interface for SimBiology could help in your case. To op...

3 years ago | 1

| accepted

Answered

Mathematical calculation required for how matlab simbiology performs local sensitivity analysis for a set of ODEs in simbiology model analyzer. (https://www.mathworks.com/help/simbio/ug/perform-sensitivity-analysis-for-tumor-growth.html)

Hi Darshna, Here is a link with some information for how to interpret the sensitivity (time/bar) plots. The reported values, an...

Mathematical calculation required for how matlab simbiology performs local sensitivity analysis for a set of ODEs in simbiology model analyzer. (https://www.mathworks.com/help/simbio/ug/perform-sensitivity-analysis-for-tumor-growth.html)

Hi Darshna, Here is a link with some information for how to interpret the sensitivity (time/bar) plots. The reported values, an...

3 years ago | 0

| accepted

Answered

Percentage perturbation in Simbiology Local Sensitivity Analysis (https://www.mathworks.com/help/simbio/ug/perform-sensitivity-analysis-for-tumor-growth.html)

Hi Darshna, the sensitivities you are referring to are local derivatives. SimBiology integrates a system of differential equati...

Percentage perturbation in Simbiology Local Sensitivity Analysis (https://www.mathworks.com/help/simbio/ug/perform-sensitivity-analysis-for-tumor-growth.html)

Hi Darshna, the sensitivities you are referring to are local derivatives. SimBiology integrates a system of differential equati...

3 years ago | 0

| accepted

Answered

Unit testing on Simbiology created model

Hi Andrew, That's an interesting project you are investigating! Below are a couple thoughts on how you could go about testing b...

Unit testing on Simbiology created model

Hi Andrew, That's an interesting project you are investigating! Below are a couple thoughts on how you could go about testing b...

3 years ago | 1

| accepted

Answered

In Simbiology, how to analyze sensitivity analysis?

Hi, SimBiology supports different ways to analyze sensitivities. Here is a documentation page with an overview and links to dif...

In Simbiology, how to analyze sensitivity analysis?

Hi, SimBiology supports different ways to analyze sensitivities. Here is a documentation page with an overview and links to dif...

3 years ago | 0

| accepted

Submitted

Model Debugger for SimBiology

The Model Debugger for SimBiology lets you analyze model responses, model structure, and expressions during simulations.

3 years ago | 2 downloads |

Answered

Simulating multiple model parameterizations using scenarios and simfunctions

Hi Abed, The short answer why you see the error message is that the SimFunction is being created with one dose input, and it is...

Simulating multiple model parameterizations using scenarios and simfunctions

Hi Abed, The short answer why you see the error message is that the SimFunction is being created with one dose input, and it is...

4 years ago | 0

Answered

parfor error for global SA Morris method using SimBiology

Hi, It looks like you are running into an issue that the SimBiology model is not copied to the workers natively. In MATLAB vers...

parfor error for global SA Morris method using SimBiology

Hi, It looks like you are running into an issue that the SimBiology model is not copied to the workers natively. In MATLAB vers...

4 years ago | 3

| accepted

Answered

Computed parameter in Simbiology

Hi Rajeev, You could call the function getequations on your model, getequations(m1). This gives you a printout of the values. I...

Computed parameter in Simbiology

Hi Rajeev, You could call the function getequations on your model, getequations(m1). This gives you a printout of the values. I...

4 years ago | 0

| accepted

Answered

SimBiology getConfigSet does not recognise model object

Hi Alvaro, I think you are seeing an unfortunate naming collision. SimBiology's method is getconfigset (all lower-case). The me...

SimBiology getConfigSet does not recognise model object

Hi Alvaro, I think you are seeing an unfortunate naming collision. SimBiology's method is getconfigset (all lower-case). The me...

4 years ago | 3

| accepted

Answered

Simbiology parameter is not recognized by EventFcns

Hi, It looks like the event is changing the value of a parameter that is marked as constant. You can change the "Constant" prop...

Simbiology parameter is not recognized by EventFcns

Hi, It looks like the event is changing the value of a parameter that is marked as constant. You can change the "Constant" prop...

4 years ago | 2

| accepted

Answered

creating a mesh figure

Hi Parul, If I understand correctly what you are trying to do, then you are very much on the right track. So it is probably onl...

creating a mesh figure

Hi Parul, If I understand correctly what you are trying to do, then you are very much on the right track. So it is probably onl...

5 years ago | 0

| accepted

Answered

solve 4 equations with some unknowns parameters.

Hi, I think you are using a modern syntax to call 'solve' that was not supported in R2010b. The equivalent call in R2010b wou...

solve 4 equations with some unknowns parameters.

Hi, I think you are using a modern syntax to call 'solve' that was not supported in R2010b. The equivalent call in R2010b wou...

5 years ago | 1

Answered

Shorthand for sbioselect/set

Hi Jim, Your wrapper looks like a good solution for conveniently changing individual parameter/species/etc. properties. Thank...

Shorthand for sbioselect/set

Hi Jim, Your wrapper looks like a good solution for conveniently changing individual parameter/species/etc. properties. Thank...

5 years ago | 1

Answered

competitive enzymatic inhibition matlab sbiomodel

Hi, The ParameterVariableNames and SpeciesVariableNames properties on the kinetic law need to be specified to tell it which p...

competitive enzymatic inhibition matlab sbiomodel

Hi, The ParameterVariableNames and SpeciesVariableNames properties on the kinetic law need to be specified to tell it which p...

6 years ago | 2

Answered

How to fit steady state data in SimBiology Desktop 5.7?

Hi Nick, Here is an example of a simple model with one mass action reaction, L <-> C, with initial amounts of L and C b...

How to fit steady state data in SimBiology Desktop 5.7?

Hi Nick, Here is an example of a simple model with one mass action reaction, L <-> C, with initial amounts of L and C b...

6 years ago | 0

| accepted