File Exchange

image thumbnail

GTOM - Generalized Topological Overlaping Measure

version 1.0 (5.28 KB) by

Efficient implementation of the Generalized Topological Overlaping Measure (GTOM)



View License

COMPUTEGTOM computes the generalized overlaping measure algorithm (GTOM) [1]

Joaquin Goñi <>
Iñigo Martincorena <>

University of Navarra -
Dpt. of Physics and Applied Mathematics &
Centre for Applied Medical Research. Pamplona (Spain).

November 22nd, 2007

batchComputeGTOM.m contains an example that loads and adjacency matrix and computes the GTOM matrix. Finally, a hierarchical clustering of GTOM matrix is carried out.

Type 'help computeGTOM' for further information and examples.

GTOM [1] Yip A, Horvath S (2007) Gene network interconnectedness and the generalized topological overlap measure BMC Bioinformatics 2007, 8:22
TOM [2] Ravasz E. et al. (2002) Hierarchical Organization of Modularity in Metabolic Networks Science 297 (5586), 1551.

Comments and Ratings (2)


Xun Huang

Well done. Thank you.

MATLAB Release
MATLAB 7 (R14)

Download apps, toolboxes, and other File Exchange content using Add-On Explorer in MATLAB.

» Watch video

Win prizes and improve your MATLAB skills

Play today