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CellSort

by Eran Mukamel

 

25 Sep 2009 (Updated 24 Nov 2009)

Code covered by BSD License  

Toolbox for automated sorting of cellular calcium signals from optical imaging data.

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File Information
Description

This toolbox includes routines for using principal component analysis (PCA) and independent component analysis (ICA) to extract cellular signals from imaging data sets. A full description and validation of the method is provided in the paper, "Automated Analysis of Cellular Signals from Large-Scale Calcium Imaging Data," Neuron, 63:747 (2009): http://tinyurl.com/cellsort

MATLAB release MATLAB 7.7 (R2008b)
Zip File Content  
HTML Files Description of CellsortApplyFilter,
Description of CellsortChoosePCs,
Description of CellsortFindspikes,
Description of CellsortICA,
Description of CellsortICAplot,
Description of CellsortPCA,
Description of CellsortPlotPCspectrum,
Description of CellsortSegmentation,
Index for Directory CellSort 1.0,
Index for Directory CellSort 1.2
Other Files
__MACOSX/CellSort 1.1/._.DS_Store,
__MACOSX/CellSort 1.1/._CellsortApplyFilter.m,
__MACOSX/CellSort 1.1/._CellsortChoosePCs.m,
__MACOSX/CellSort 1.1/._CellsortFindspikes.m,
__MACOSX/CellSort 1.1/._CellsortICA.m,
__MACOSX/CellSort 1.1/._CellsortICA_Optimize.m,
__MACOSX/CellSort 1.1/._CellsortICAplot.m,
__MACOSX/CellSort 1.1/._CellsortPCA.m,
__MACOSX/CellSort 1.1/._CellsortPlotPCspectrum.m,
__MACOSX/CellSort 1.1/._CellsortSegmentation.m,
__MACOSX/CellSort 1.1/._README.rtf,
__MACOSX/CellSort 1.1/doc/._.DS_Store,
__MACOSX/CellSort 1.1/doc/._m2html.css,
__MACOSX/CellSort 1.1/doc/images/._alpha.png,
__MACOSX/CellSort 1.1/doc/images/._c++.png,
__MACOSX/CellSort 1.1/doc/images/._c.png,
__MACOSX/CellSort 1.1/doc/images/._demoicon.gif,
__MACOSX/CellSort 1.1/doc/images/._down.png,
__MACOSX/CellSort 1.1/doc/images/._fortran.png,
__MACOSX/CellSort 1.1/doc/images/._hp.png,
__MACOSX/CellSort 1.1/doc/images/._left.png,
__MACOSX/CellSort 1.1/doc/images/._Linking to Harvard Library E-Resources - Harvard College Library.webarchive,
__MACOSX/CellSort 1.1/doc/images/._linux.png,
__MACOSX/CellSort 1.1/doc/images/._matlabicon.gif,
__MACOSX/CellSort 1.1/doc/images/._mex.png,
__MACOSX/CellSort 1.1/doc/images/._Mukamel1a.jpg,
__MACOSX/CellSort 1.1/doc/images/._right.png,
__MACOSX/CellSort 1.1/doc/images/._sgi.png,
__MACOSX/CellSort 1.1/doc/images/._simulinkicon.gif,
__MACOSX/CellSort 1.1/doc/images/._solaris.png,
__MACOSX/CellSort 1.1/doc/images/._up.png,
__MACOSX/CellSort 1.1/doc/images/._windows.png,
CellSort 1.1/.DS_Store,
CellSort 1.1/CellsortApplyFilter.m,
CellSort 1.1/CellsortChoosePCs.m,
CellSort 1.1/CellsortFindspikes.m,
CellSort 1.1/CellsortICA.m,
CellSort 1.1/CellsortICA_Optimize.m,
CellSort 1.1/CellsortICA_Optimize.m~,
CellSort 1.1/CellsortICAplot.m,
CellSort 1.1/CellsortPCA.m,
CellSort 1.1/CellsortPlotPCspectrum.m,
CellSort 1.1/CellsortSegmentation.m,
CellSort 1.1/doc/.DS_Store,
CellSort 1.1/doc/images/alpha.png,
CellSort 1.1/doc/images/c++.png,
CellSort 1.1/doc/images/c.png,
CellSort 1.1/doc/images/demoicon.gif,
CellSort 1.1/doc/images/down.png,
CellSort 1.1/doc/images/fortran.png,
CellSort 1.1/doc/images/hp.png,
CellSort 1.1/doc/images/left.png,
CellSort 1.1/doc/images/Linking to Harvard Library E-Resources - Harvard College Library.webarchive,
CellSort 1.1/doc/images/linux.png,
CellSort 1.1/doc/images/matlabicon.gif,
CellSort 1.1/doc/images/mex.png,
CellSort 1.1/doc/images/Mukamel1a.jpg,
CellSort 1.1/doc/images/right.png,
CellSort 1.1/doc/images/sgi.png,
CellSort 1.1/doc/images/simulinkicon.gif,
CellSort 1.1/doc/images/solaris.png,
CellSort 1.1/doc/images/up.png,
CellSort 1.1/doc/images/windows.png,
CellSort 1.1/doc/m2html.css,
CellSort 1.1/README.rtf,
license.txt
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Updates
24 Nov 2009

Fixed a minor typo in documentation for CellsortICA - EAM 11/24/09
Tag Activity for this File
Tag Applied By Date/Time
neuroscience Eran Mukamel 25 Sep 2009 12:10:10
image processing Eran Mukamel 25 Sep 2009 12:10:10
signal processing Eran Mukamel 25 Sep 2009 12:10:10
independent component analysis Eran Mukamel 25 Sep 2009 12:10:10
 

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