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MSKCC CGDS Cancer Genomics Toolbox

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MSKCC CGDS Cancer Genomics Toolbox

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03 May 2011 (Updated )

Functions for retrieving data from the Cancer Genomics Data Server (CGDS) at MSKCC cBio.

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Description

This toolbox provides direct access to cancer genomics data from within the MATLAB environment. The toolbox will query the Cancer Genomics Data Server Web API, provided by the Computational Biology Center at Memorial Sloan-Kettering Cancer Center, and return data in a structured format.

A tutorial ('showdemo cgdstutorial') makes it easy to get started.

Required Products Statistics and Machine Learning Toolbox
MATLAB release MATLAB 7.9 (R2009b)
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Updates
05 Sep 2011 1.1

v1.02 9/5/2011: Adapted to changes in web API.

09 Sep 2011 1.2

Minor update to cgdstutorial.m

22 Dec 2011 1.3

Updates to comply with changed naming conventions for case set IDs and genetic profile IDs.

27 Jun 2012 1.4

Bug fixes to cgdstutorial.m

19 Sep 2013 1.5

Version 1.06: Adapted to changes in web API (clinical data). Previous version no longer works correctly. Trailing '/' no longer required in URL. Updated URL in help pages. Updated tutorial for new clinical data format.

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