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MSKCC CGDS Cancer Genomics Toolbox

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MSKCC CGDS Cancer Genomics Toolbox

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03 May 2011 (Updated )

Functions for retrieving data from the Cancer Genomics Data Server (CGDS) at MSKCC cBio.

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Description

This toolbox provides direct access to cancer genomics data from within the MATLAB environment. The toolbox will query the Cancer Genomics Data Server Web API, provided by the Computational Biology Center at Memorial Sloan-Kettering Cancer Center, and return data in a structured format.

A tutorial ('showdemo cgdstutorial') makes it easy to get started.

Required Products Statistics Toolbox
MATLAB release MATLAB 7.9 (R2009b)
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Updates
05 Sep 2011

v1.02 9/5/2011: Adapted to changes in web API.

09 Sep 2011

Minor update to cgdstutorial.m

22 Dec 2011

Updates to comply with changed naming conventions for case set IDs and genetic profile IDs.

27 Jun 2012

Bug fixes to cgdstutorial.m

19 Sep 2013

Version 1.06: Adapted to changes in web API (clinical data). Previous version no longer works correctly. Trailing '/' no longer required in URL. Updated URL in help pages. Updated tutorial for new clinical data format.

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