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Empirical Wavelet Transforms

version 3.4 (1.54 MB) by

This toolbox proposes the original implementation of Empirical Wavelet Transforms

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Updated

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September 2016: new version 3.4!
This version fixes several bugs in the new faster scale-space boundary detection function. A bug was also fixed in the function which plots the detected boundaries.
In this toolbox, we implement the Empirical Wavelet Transform for 1D and 2D signals/images. The principle consists in detecting Fourier supports on which Littlewood-Paley like wavelets are build. In 2D, we revisit different well-known transforms: tensor wavelets, Littlewood-Paley wavelets, ridgelets and curvelets.
The toolbox also provides the scripts used to generate the experiments in the papers:
- J.Gilles, "Empirical wavelet transform" to appear in IEEE Trans. Signal Processing, 2013.
Preprint available at ftp://ftp.math.ucla.edu/pub/camreport/cam13-33.pdf
- J.Gilles, G.Tran, S.Osher "2D Empirical transforms. Wavelets, Ridgelets and Curvelets Revisited", SIAM Journal on Imaging Sciences, Vol.7, No.1, 157--186, 2014.
Preprint available at ftp://ftp.math.ucla.edu/pub/camreport/cam13-35.pdf
- J.Gilles, K.Heal, "A parameterless scale-space approach to find meaningful modes in histograms - Application to image and spectrum segmentation", submitted 2014.
Preprint available at
ftp://ftp.math.ucla.edu/pub/camreport/cam14-05.pdf
See the README file inside the archive for more instructions

Comments and Ratings (75)

Haris Hussain

Hey Jerome! Hope you are doing well. Its a fantastic toolbox, thumbs up for your work. I am having a trouble when i fix the number of modes, say N=10. I get an error while using this function " Hilb=EWT InstantaneousComponents(ewt,boundaries) " :
??? Error using ==> vertcat
CAT arguments dimensions are not consistent.

Error in ==> EWT_InstantaneousComponents at 30
boundaries=[0 ; boundaries ; pi];

Error in ==> testingforloop at 35
Hilb1=EWT_InstantaneousComponents(ewt,boundaries);

Hope u understood the problem and can guide me well. Thanks in advance.

Dear Jerome, Thank you very much for valuable suggestions. One more question, X-axis and Y-axis of modes represents what information? X-axis is time axis? For every mode my x-axis showing scale like (0, 0.1,0.2,0.3.....1). And Y-axis showing amplitude?

Jerome Gilles

Dear Muhammad, I'm guessing you are using the full automatic method using the scale-space option? Then you may use another method (like the localmaxmin option) where you can give the maximal number of expected modes.
If you want stick with the full automatic method and then at the end keep only N modes, well it is up to you to define a selection criteria ...

Basically, the IMF and MODE are the same thing.

Dear Jerome, I am using EWT for Multi-channel EEG Signals. The problem is that, for every single channel I am getting many modes like around 29 to 30 modes for each channel. I want to use 8 to 10 modes for my experiment and want to extract some features from that modes. Can you please suggest me on which basis should I select 8 to 10 modes?
Another question, can you please tell me what is the difference between IMF and MODE?

Jerome Gilles

Dear Mayakesu,

1) I have no idea, I didn't myself investigated the use of EWT for denoising purposes...
2) I can't say specifically for denoising but the aim of the EWT is to extract harmonic modes (i.e oscillating modes). For instance textures are particularly good targets for the EWT.
3) well ... yes, the E in EWT is for Empirical, meaning that the construction of the wavelets depends on the input signal/image. You should read the papers ...

mayakesu

Dear Jerome Gilles, I'd like to ask you some questions:
1、After the empirical transformation, why are the PSNR values obtained for each image denoising different?Does this have anything to do with the image itself?
2、What features of an image are effectively denoised by empirical transformations?Is it just more effective for images that have certain features?
3、Are the image processing effects of EWT_2D_Curvlet_I and EWT_2D_Curvlet_II determined by the features of the image itself?
I am looking forward to your reply,thank you very much.

Jerome Gilles

Dear Muhammad, nu_n is omega_n, it is a typo ;-)

DILEEP KUMAR

Dear Gilles,iam working on a 1 dimension signal,iam getting an error
Attempt to reference field of non-structure array.

Error in EWT_Boundaries_Detect (line 72)
if params.log==1

Error in EWT1D (line 51)
boundaries = EWT_Boundaries_Detect(abs(ff(1:round(length(ff)/2))),params);

Error in den_EWT1D (line 25)
u=EWT1D(x1,1);
what is the value of params I have to keep if I have asignal which has one column having 1000 values

DILEEP KUMAR

Dear Gilles,can Ewt transform will give better snr compared to emd

Dear Jerome, I am reading EWT paper. Can you please suggest me what information Vn is giving, used in Figure 4. on page 4001. You have used different values of Vn, vn=1, v(n+1)=2.5? What information we get from these values?

Jerome Gilles

Dear Ahmed, if you don't give me the entire error message, I cannot guess what's happening ...

Ahmed Hassan

dear Jerome. i am trying to run your EWT_boundaries_detec function but compiler is indicating an error that "Error in EWT_Boundaries_Detect (line 72)
if params.log==1"
kindly guide me to remove it

Jerome Gilles

Dear Muhammad, unfortunately such document does not exist! I'm currently working with my students on building such theory. The only papers which give you a description of the EWT are the papers cited above ...

Dear jerome, can you please provide any tutorial/ easy understanding/general theoretical formalism to build a complete theory of empirical wavelets (and frames)? Even though I have basic understanding of wavelets still I am facing difficulties to understand the theory behind EWT

Jerome Gilles

Are you sure you add all paths? This function is in the folder EWT/Boundaries/ check that this folder is in the Matlab paths ...

Dear Jerome Gills, I have added the path of the toolbox and all its subfolders in MATLAB. I tried to run Test_EWT1D but again i got following errors
Undefined function or variable 'EWT_Boundaries_Detect'.

Error in EWT1D (line 51)
boundaries = EWT_Boundaries_Detect(abs(ff(1:round(length(ff)/2))),params);

Error in Test_EWT1D (line 92)
[ewt,mfb,boundaries]=EWT1D(f,params);

Please guide me how to resolve these issues

Jerome Gilles

I'm not sure to understand, are you saying that you get that infinite loop only when you set params.log=1?

Otherwise, are you saying that the line ff=ff(f) gives you an error? If it is the case, the problem might be your signal because the fft function is a Matlab builtin function...

rama krishna

can any one please suggest me with the error i posted .

rama krishna

Dear Gilles, i tried using EWT_1D, but when ever the file starts running after giving the inputs (f,params) .. it starts moving in to an infinite loop and also it is showing an error in the fourier domain in EWT_1D at " ff=fft(f)" .
2. i am trying to give the input of params as params.log=1.
so can you please help me to solve this problem.

Jerome Gilles

you have to add the path of the toolbox and all its subfolders in Matlab, see the Matlab documentation on how to do that...

Dear Jerome Gills, I tried to run Test_EWT1D but i got the following errors

>> Test_EWT1D
Undefined function or variable 'EWT1D'.

Error in Test_EWT1D (line 92)
[ewt,mfb,boundaries]=EWT1D(f,params);

Please help me how to resolve this error.

Jerome Gilles

Dear Mayakesu,

1) I used the term "empirical" because it is indeed an alternative of the EMD technique.
2) so far the above mentioned papers are the only one we published. We can currently working on defining a general theoretical formalism to build a complete theory of empirical wavelets (and frames). Hopefully, we will submit a paper soon ;-)

mayakesu

Dear Jerome Gilles,by reading the relevant literature and running the test programs,I seem to understand my question on the coefficients , I would also like to ask you another questions, 1,why the empirical wavelet transform is called the empirical of it, does it has a great relationship with the empirical mode decomposition?
2, the theoretical knowledge of the image processing of empirical wavelet transform, in addition to the paper mentioned, can you help me recommend some of this literature?
Thanks very much.

Jerome Gilles

Dear Jasen,

2) The mfb variable contains the filters in the FOURIER domain (as written in the documentation).

1) you don't the correct reconstruction when you try the provided signals? I mean the example in the Test_EWT1D.m file? That's strange because everything work well for me ...

Jasen Sze

Hi Jerome Gilles,
I know EWT a few days ago, amazing work.
I have some questions to ask.1,In the newest toolbox(1D), I can't get the right restructed signal,It seems taht the filter didn't work; 2,I saw the codes and I'm confused that the 'mbf' was in time domain,but 'ewt' was in Fourier domain, and emperical wavelets is the inner product of two, is it right?

zijian qiao

Jerome Gilles

Hi Mayakesu, the answer to which output variables contains the wavelet coefficients is in the documentation (see the pdf document in the documentation folder)...
Regarding your question "what is the difference from the processing of the wavelet coefficients?", I'm not sure to understand the question ... do you mean to what correspond the different transform? If it is the question then you need to read the corresponding papers ...

mayakesu

Dear Jerome Gilles;
Hello! I want to deal with the image by transforming the coefficients.Like [ewtLP,mfb,boundaries]=EWT2D_LittlewoodPaley(f,params)、[ewtc,mfb,Bw,Bt]=EWT2D_Curvelet(f,params);
Which output parameters can reflect the transform coefficients (including the detail coefficient and the approximate coefficient)?how to use them, and what is the difference from the processing of the wavelet coefficients? These questions have bothered me for a long time,and thank you very much for being able to answer these questions in your busy schedule. I am looking forward to your reply,thank you.

na zhang

Jerome Gilles

Hi Hesam,

You didn't pass the right variable to the function!
In your case you must call
[ewt,mfb,boundaries]=EWT1D(signal',params);

instead of
[ewt,mfb,boundaries]=EWT1D(f,params);

hesam akbari

hesam akbari

Hi dear Jerome Gilles;
I want to Change EWT1D cods to my noisy signal,
To this work ,i write :

Fs = 10000;
f = 1000;
n= [0:1/Fs:15];
x=sin(2*pi*f*n);
y=awgn(x,30);
signal = y;
params.SamplingRate = 10000;
params.globtrend = 'none';
params.degree=6;
params.reg = 'gaussian';
params.lengthFilter = 10;
params.sigmaFilter = 1.5;
params.detect = 'scalespace';
params.typeDetect='otsu';
params.N = 10;
params.completion = 0;
params.InitBounds = [8 50];
params.log=0;
[ewt,mfb,boundaries]=EWT1D(f,params);

And my error is:

Attempted to access boundaries(0); index must be a positive integer
or logical.

Error in EWT_Meyer_FilterBank (line 35)
r=(pi-boundaries(Npic))/(pi+boundaries(Npic));

Error in EWT1D (line 61)
mfb=EWT_Meyer_FilterBank(boundaries,length(ff));

Error in Untitled (line 60)
[ewt,mfb,boundaries]=EWT1D(f,params);

I think that this error comes from choosing the "params.InitBounds = [8 50]",
Please help me to choosing correct boundaries ,thanks.
Excuse me for my poor grammar.

bing wang

Jerome Gilles

Hi all, good news!

A priori I fixed all bugs, so please update your version!

Let me know if you still have some issues and thanks for those of you who reported the problem!

Jerome Gilles

Dear, it turns out that a bug related the new part of the code is present in this version. It didn't showed up in the test I ran before updating the toolbox but some of you as well as some of my students reported me that bug.
I'm currently working to fix it. Then if you don't need the toolbox quickly, I'll suggest that you wait for the next update (hopefully within a few days).
If you need a working toolbox, feel free to contact me to get the previous version.

Chammy Wang

when i use another boundary detection method ,the EWT_TF_Plan doesn't work.
Error using vertcat
Dimensions of matrices being concatenated are not consistent.

Chammy Wang

BEYOND

BEYOND (view profile)

sir i am getting the below response:
1.Error using zeros-Out of memory. Type HELP MEMORY for your options.
2.Undefined function or variable 'instfreq'.

Jerome Gilles

Mani,

when you said "large data", what size are you talking about?
How many samples and encoded in which format?

I'm afraid that the issue is that your computer has not enough memory to support these calculations ... btw, are you using the scale-space method?

mani

mani (view profile)

sir i am getting the below response,
"Out of memory. Type HELP MEMORY for your options."

Jerome Gilles

Dear Mani,

What is the error message??

mani

mani (view profile)

sir i am getting a memory error for large data. can u suggest anything.

Jerome Gilles

Dear Chhatramani Singh,

The answer is no for two main reasons:
-I don't have the time
-I don't know python

But I would more than interested to have a python version of that toolbox ;-)

and sir i have another question for you are you planning to implement this in python also

Jerome Gilles

If you use another boundary detection method than the scale-space one, you will be able to fix the number of modes you want (see the documentation PDF).

sumit

sumit (view profile)

dear sir,
i am working on speech signal for denoising, after adding noise every time ewt gives variable different imf(component). for my work i want fix number of imf so what should i do to get it.

sumit

sumit (view profile)

sir, can you tell me what code should i use for calculation of am fm bandwidth component of ewt.

Jerome Gilles

Dear Sumit,

A priori, the EWT gives the same type of components as the EMD, so yes you should be able to compute the same "bandwidths" as it is done with the EMD ;-)

sumit

sumit (view profile)

sir,
AM -amplitude modulation bandwidth and FM- frequency modulation bandwidth components .which we get by decompose the eeg signal by EMD method . can we get these component by EWT also?

Di Xu

Di Xu (view profile)

Jerome Gilles

Dear Sumit,

Well, what are your definitions of AM,FM bandwidths?

Yao RuiQi

run TEST_EWT1D.m
error:The variable ewt in a parfor cannot be classified
error in:
parfor k=1:length(mfb)
ewt{k}=real(ifft(conj(mfb{k}).*ff));
ewt{k}=ewt{k}(l:end-l);
end

sumit

sumit (view profile)

sir, i am using function
Hilb=EWT_InstantaneousComponents(ewt,boundaries)
so i get the amplitude envelop and instantanious frequency figures of imfs . now i want to calculate the AM and FM bandwidth of the signal what should i do...

Jerome Gilles

well the code to perform that transform is available here ... click the "Download Zip" button on top right of this page ...

i want to use this transform in detection of epileptic seizure in eeg signal .so can you provide the required coding
my email add - satyavijaytiwari@gmail.com

thank you sir,
I will look in to it...

Jerome Gilles

Dear Satyavijay,

I don't have that version of Matlab so I can't try myself but since that toolbox does not use any "funky" toolboxes, I would say that it will probably work in Matlab 2013 ;-)

does it work matlab 2013

Jerome Gilles

New version available!

It fixes some bugs in the curvelet transform and proposes the curvelet option 3

Jerome Gilles

Dear Trunal,

The purpose of the EWT is to extract the different harmonic modes from your input signal.

What you will do with these modes is completely up to you. For instance, in some fields, people look at the time-frequency plots to find useful information. In denoising, people "clean" the wavelet coefficients (harmonic modes here) and then reconstruct the denoised signal,...

Again, it depends on your final goal. I understand you want to find some parameters,... does it mean that you have a model predicting the different modes and you want to fit this model (i.e find its parameters) to your data?

In general, I would suggest you read the (extensive) literature on wavelets and their use in applications.

thanx for rlpy ,
sir I want to know about modes and boundaries, and how they formed, at what parameter they depends.

Jerome Gilles

Dear Trunal,

Thanks for using this toolbox!
It is difficult to reply to your question as it depends on what is your final goal ...

sir I am doing work on ECG feature extraction, for extraction what is next step after mode (using Test_EWT1D) selection. plz sir help me out.

Jerome Gilles

Dear all,

I just uploaded a brand new 2.0 version of this toolbox!
Bugs fixes + many new functions available.

As usual do not hesitate to give me your feedback ;-)

Nidhin

Nidhin (view profile)

Dear Jerome,
My email-id is nidhin89@gmail.com.

Thankyou for the reply. :D
Looking forward for the new version. ;)

Nidhin

Jerome Gilles

Hi Nidhin

Can you send me an email and I will send you the missing file.

Btw, I plan to release a new version of this toolbox very soon with some new cool features ;-)

Jerome

Nidhin

Nidhin (view profile)

Hi Jerome
When I tried to run the code 'Test_EWT2D_LP.m',the following error is shown:
??? Undefined function or method 'Show_EWT2D' for input
arguments of type 'cell'.

I searched for the function Show_EWT2D in the folders but couldn't find.
Pls help

Thanku for the help regarding ftc_seg mex compilation :D

Nidhin

santhoshsz

Dear sir, Out of your toolbox which is best suitable for extracting feature in an image.

Jerome Gilles

What is spikelet?

Aneesh

Aneesh (view profile)

How can i use spikelet in matlab..

Jerome Gilles

Dear Vidyasagar,

Sorry for the late answer, I was travelling a lot these last weeks!

concerning the compilation "mex ftc_seg.c", did you go on the right folder (i.e. Boundaries/FTC)?

otherwise, for the supplementary lines of code for Windows users, you should add them in the file ftc_seg.c itself.

let me know if this help ;-)
Jerome

vidyasagar k

hello Jerome. thankyou very much for the tool box.
iam trying to compile under windows, iam getting an error.

>> mex ftc_seg.c

C:\PROGRA~1\MATLAB\R2010A\BIN\MEX.PL: Error: 'ftc_seg.c' not found.

??? Error using ==> mex at 222
Unable to complete successfully.

can you please suggest me the solution. where should i add the bellow mentioned code?
double round(double val)
{
return floor(val + 0.5);
}

i mean which part of ftc_seg.c

please help.
thankyou very much.

Jerome Gilles

For people trying to compile ftc_seg.c under Windows, you should add the following lines in the C file if you get some linking error:

double round(double val)
{
return floor(val + 0.5);
}

Updates

3.4

This version fixes several bugs in the new faster scale-space boundary detection function. A bug was also fixed in the function which plots the detected boundaries.

3.2

-new faster scale-space boundary detection function
-all "parfor" call are removed to make the toolbox compatible for users not having the parallel toolbox.

3.0

July 2015: new version 3.0!
This version fixes two bugs in the curvelet transform + implementation of the curvelet option 3 (detect scales per each angular sectors)

1.3

add the documentation

1.2

bugs fixes + new functions (scale-space detection method, more accurate time-frequency plotting, ...)

1.1

Change the location of some variable declaration in ftc_seg.c in order to be compliant with more compiler.

MATLAB Release
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EWT/1D/

EWT/2D/Curvelet/

EWT/2D/Littlewood-Paley/

EWT/2D/Ridgelet/

EWT/2D/Tensor/

EWT/Boundaries/

EWT/Boundaries/LocalMaxima/

EWT/Boundaries/MorphoMath/

EWT/Boundaries/PowerLaw/

EWT/Boundaries/ScaleSpace/

EWT/Tests/1D/

EWT/Tests/2D/

EWT/Utilities/1D/

EWT/Utilities/2D/

EWT/Utilities/