pierremegevand/errorbar_groups
- 4 files
- 41 downloads
At its most basic, this function produces bar plots similar to those obtained using MATLAB's BAR(Y,'grouped') function call, and then overlays error bars onto the corresponding bars.
ERRORBAR_GROUPS allows customizing the plot in several ways. For instance, both the width of the bars themselves and that of the error bars can be adjusted. The function allows asymmetric values for the lower and upper bounds of the error bars. The colors of the bars and error bars can also be customized. ERRORBAR_GROUPS allows transmitting optional input property-value pairs to both the BAR and ERRORBAR functions, making it quite versatile.
Comments and Ratings (50)
Updates
| 1.7.0.0 | Removed dependency on DISTINGUISHABLE_COLORS. |
|
| 1.6.0.0 | Thanks to Ariel Tankus for fixing an issue with MATLAB version R2014b (and presumably beyond) where the errorbar width could no longer be customized. This is apparently due to a change in the way MATLAB handles error bars in the graphics. |
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| 1.5.0.0 | Corrected an issue where no error bar was plotted in the case that one side (upper or lower) was set to 0. See also comments. |
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| 1.4.0.0 | Simplified the code defining default values and dealing with optional input arguments. Added option to skip plotting the error bars altogether. |
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| 1.3.0.0 | With help from David Groppe, added optional handles inputs for plotting into existing figure or axes. |
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| 1.2.0.0 | (this time with the correct files in the archive...) |
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| 1.1.0.0 | Added a line at the end to adjust the limits of the X axis to the plot. |
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Acknowledgements
Inspired by: barweb (BARgraph With Error Bars), Adjust error bar width, Create Healthy Looking Error Bars
Inspired: superbar
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Filippo Cerpelloni (view profile)
Pierre Mégevand (view profile)
Hi Wei-Li, sorry to read that. I just checked on my machine and example 4 in the help section worked fine. Does the error message include more information, e.g. line number? Could you try and run the example code to see if that works? Thanks.
Wei-Li Hsu (view profile)
the 'optional_bar_arguments' and 'optional_errorbar_arguments' do not work for me. I got an error message as "Unbalanced or unexpected parenthesis or bracket." Please help. Thanks.
Emanuel Ebner (view profile)
Tawfik Al-Nusairi (view profile)
Donghoon Yeo (view profile)
I found the same problem as Pierre... And Kyle and Xi were correct about how to fix the problem. Much thanks:)
Prateek Gupta (view profile)
Markus Wirnsberger (view profile)
Jose Pardo (view profile)
Xi Zong (view profile)
I think Kyle was right. I simply commented out 250 - 253 and the issues on the error bar x position were gone.
Kyle Hansen (view profile)
I figured out where this error is occurring. What is it you are doing on lines 250-258? What seems to occur is that:
he_xdata(4:9:end)=he_xdata(1:9:end)-errorbar_width*bar_width/2;
Changes the x position of the error bars to be where the 1st error bar is, shifted by half the bar width in the 1st position. That is what the code says to do, so I'm wondering why you are doing that.
The same things happen with the 4th & 5th errorbar, but the 6th is fine. It then seems to happen again for the 7th and 8th, though I'm not plotting those.
If you can explain what you were trying to do with those versions of code, I'm happy to push changes to the Git. I'm using Matlab 9.1
Pierre Mégevand (view profile)
Hi Javier, as long as I don't have access to another version of MATLAB than R2009b, I can't work on making the code compatible with the most recent releases. I am still hoping to get my hands on a newer version soon. Stay tuned.
Javier Gonzalez Castillo (view profile)
I am using R2016b and I find the same issue as Sankar... more than 3 groups lead to bars being misplaced. Any solutions for this?
Pierre Mégevand (view profile)
Hi Sankar, with my version of MATLAB (R2009b), I have no difficulty plotting more than 3 groups (e.g. the second example in the help section of the function works just fine on my machine). Which version are you using?
sankar basu (view profile)
Hi ! It does not seem to work properly with more than three groups. The error-bars for the forth group gets misplaced. There appears to be missing a coordinate transformation.
Pierre Mégevand (view profile)
Dear Ajay, MATLAB's BAR function does not have an option to fill the bars with hatches or other patterns, and ERRORBAR_GROUPS does not provide such functionality either. You could use other user-contributed functions available on the File Exchange (see a sample here: https://blogs.mathworks.com/pick/2011/07/15/creating-hatched-patches/), or else create the bar plot with plain bars using ERRORBAR_GROUPS and then edit it in a vector drawing program like Inkscape, for instance. Hope this helps.
Ajay Goyal (view profile)
Thank you Mr. Pierre. I used your code which works very well. I need to generate similar graph but with hatched bars (as in your case colored bars are generated). Can you please help.
Lorena Freitas (view profile)
shaoqing xu (view profile)
TK1234 help me a lot, the web is useful
Nolwenn Lévêque (view profile)
Thank you !!!
Rachael Elward (view profile)
I had the same problem as Rashdj with the error bars being misplaced when the number of groups exceeds 3. I commented out the lines that Rashdj suggested and the code worked perfectly. Thank you! :)
Jae Young (view profile)
goood
wx l (view profile)
I find that 'xdata' was changed in ver. 2016, and a solution is using 'h.Bar.VertexData(1,:)' instead (By Matt fileexchange/22826-adjust-error-bar-width)
steven (view profile)
instead of using "distinguishable_colors" better define your own colors and modify line 125.
the rest of the code looks great.
yu zhang (view profile)
Easy to use, thanks
psan da (view profile)
Does not work with 2012b:
Undefined function 'makecform' for input arguments of type
'char'.
Error in distinguishable_colors (line 93)
C = makecform('srgb2lab');
Error in errorbar_groups (line 125)
bar_colors=distinguishable_colors(N_grps); % get some
distinguishable colors for the bars!
Kicking off the dependency on distinguishable_colors helps. I understand the point of using that dependency but just using builtin colormap as jet or hsv(N_grps) would make this package be more robust.
Michele Guerreri (view profile)
Ok...I've just read below. Thank you anyway!
Michele Guerreri (view profile)
Hi,
I'm trying to subplot figures obtained by using the errorbar_groups function, but I can't.
Do you have some hint on how to do that?
Thanks,
Michele.
Pierre Mégevand (view profile)
Hi Marco, thanks for the positive feedback. To use the function with subplots, you should use the 'FigID' and 'AxID' optional inputs. Here is an example:
hf=figure;
ha1=subplot(2,1,1);
ha2=subplot(2,1,2);
bar_input=rand(3,8)/2+0.5;
errorbar_input=rand(3,8)/8;
errorbar_groups(bar_input,errorbar_input,'FigID',hf,'AxID',ha1);
bar_input=rand(4,6)/2+0.5;
errorbar_lower=zeros(size(bar_input));
errorbar_upper=rand(4,6)/8;
errorbar_groups(bar_input,errorbar_lower,errorbar_upper,'FigID',hf,'AxID',ha2);
Let me know if it helps.
Marco Bertleff (view profile)
Hey, thanks for this really helpful code!
Somehow it does not work in subplots for me - it only produces empty subfigures and displays the last subfigure in a separate figure. If there is a way to fix this I would be happy to know!
Jonathan (view profile)
Hi
Thank you for the great function. I had the exact same issue as Rashdj, and his solution worked for me. No apparent adverse consequences of commenting out that block. I am using 8.5.0.197613 (R2015a)
Hongyan Zhao (view profile)
Pierre Mégevand (view profile)
Dear Rita, thanks for your interest. DISTINGUISHABLE_COLORS is a MATLAB File Exchange function by Timothy E. Holy that is available here (http://www.mathworks.com/matlabcentral/fileexchange/29702) and is also provided in the zip file together with ERRORBAR_GROUPS.
It is not necessary to have the Image Processing Toolbox (or any toolbox) for ERRORBAR_GROUPS to run. The only drawback right now is that it runs properly only on MATLAB versions older than R2014b.
Rita (view profile)
How to avoid of using the function DISTINGUISHABLE_COLORS?Since I don't have image processing toolbox.
Can I use this Grouped bar function without having Image processing toolbox?
Thanks
Pierre Mégevand (view profile)
Dear Rashdj, thanks for the feedback. I've been unable to reproduce the issue on my version of MATLAB (R2009b), so I suspect that the problem stems from the change in graphic object handling in more recent versions. I am reluctant to edit the code without being able to check myself what the consequences are, but once I can get my hands on an updated version of MATLAB (hopefully in the coming weeks) I'll debug this issue. Thank you again for the feedback.
Rashdj (view profile)
Thanks for this useful function.
There is a problem with the lines that ankara base mentions, which results in misplaced error bar whenever the number of groups exceeds 3.
Line 254-257:
he_xdata(4:9:end)=he_xdata(1:9:end)-errorbar_width*bar_width/2;
he_xdata(7:9:end)=he_xdata(1:9:end)-errorbar_width*bar_width/2;
he_xdata(5:9:end)=he_xdata(1:9:end)+errorbar_width*bar_width/2;
he_xdata(8:9:end)=he_xdata(1:9:end)+errorbar_width*bar_width/2;
Making the change that he suggests did not solve the problem for me.
But commenting the whole "for" block where it stand, did solve the issue. I am using Matlab 2015b.
Can you please fix and redistribute.
Pierre Mégevand (view profile)
Dear Sankar, thanks for your message and sorry for the long response latency.
I have tried to reproduce the issue using the following 3 examples:
bar_input=rand(3,11)/2+0.5;
errorbar_input=rand(3,11)/8;
errorbar_groups(bar_input,errorbar_input);
bar_input=rand(11,3)/2+0.5;
errorbar_input=rand(11,3)/8;
errorbar_groups(bar_input,errorbar_input);
bar_input=rand(11,11)/2+0.5;
errorbar_input=rand(11,11)/8;
errorbar_groups(bar_input,errorbar_input);
In all 3 cases, I obtained "normal-looking" plots where both the bars and the error bars would be positioned as expected. I am using version R2009b of MATLAB.
Could it be that the issue you experienced is specific to MATLAB versions R2014b and above? errorbar_groups is unfortunately not yet compatible with these most recent versions of MATLAB. Stay tuned, though, for future updates to the function.
wei li (view profile)
sankar basu (view profile)
There is a BUG in the code. (Line 254-257)
In the following block, 9 should be replaced by N_bars where
he_xdata(4:9:end)=he_xdata(1:9:end)-errorbar_width*bar_width/2;
he_xdata(7:9:end)=he_xdata(1:9:end)-errorbar_width*bar_width/2;
he_xdata(5:9:end)=he_xdata(1:9:end)+errorbar_width*bar_width/2;
he_xdata(8:9:end)=he_xdata(1:9:end)+errorbar_width*bar_width/2;
Otherwise the script would only run for <= 9 column bar_input and errorbar_input arrays
Please fix and redistribute
Pierre Mégevand (view profile)
Yes TK1234, MATLAB changed the way it handles graphic objects on version R2014b. Therefore, versions of MATLAB from then on should unfortunately not be expected to run errorbar_groups smoothly. As soon as I can get an updated version of MATLAB, I'll debug this issue.
TK1234 (view profile)
This works better:
http://www.mathworks.com/matlabcentral/answers/102220-how-do-i-place-errorbars-on-my-grouped-bar-graph-using-function-errorbar-in-matlab-7-13-r2011b
TK1234 (view profile)
Problem even on R2014b:
Try this:
"errorbar_groups([264 389 375 400 ;461 429 469 400],[5 10 10 8 ;4 8 16 8],'bar_names',{'Sandblasted','Ground Parallel','Ground Perpendicular','Ground Transverse'});"
When you add a fourth group, the error bars are displaced. Please help fix!
Pierre Mégevand (view profile)
Sorry about that Thomaz. Unfortunately, since I don't have R2015a I can't debug this issue adequately. Stay tuned though, when I upgrade my matlab version i'll definitely update the code to errorbar_groups.
Thomaz Botelho (view profile)
The error bars are misplaced again in 2015a :(
Pierre Mégevand (view profile)
Thanks for the feedback Liviu. Unfortunately, I do not have R2015a and am therefore unable to debug the graphical display problems that cropped up in the function following the R2014b update and its overhaul of graphical objects. IF you find a way to deal with the issue on your side, please keep me posted and I'll happily update the code.
Liviu (view profile)
Hi Pierre. Let me first thank you for this function!
I'm dealing with this problem. I'm trying to plot in 2015a a single group with some bars in it, e.g.:
Y = randi(10,[1 7]);
e = randi(3,[1,7]);
errorbar_groups(Y,e)
Bars are misplaced. If I transpose instead Y and e: errorbar_groups(Y',e')
it produces groups that are too far apart
Could you suggest a way to fix this?
Pierre Mégevand (view profile)
Thanks for the feedback Tyler. Have you tried downloading the latest version of errorbar_groups (updated on Apr 8, 2015)? The code fix courtesy of Ariel Tankus might solve the issue. Thanks for keeping me posted.
Tyler Bleazard (view profile)
This does not work for 2014b, the error bars are misplaced. Could you please fix
Pierre Mégevand (view profile)
Thanks for your message Jonas. Would you mind being more specific as to what did not work? Perhaps with the error message thrown my MATLAB or the code line numbers that are at fault?
I just re-ran all 4 examples from the function and I did find out a problem when plotting different lengths for the upper and lower error bars. I've corrected the problem and re-uploaded the function. But I have the feeling that you were pointing out to another issue.
Jonas (view profile)
Dear Pierre,
thanks for your nice grouped bar plot with error bar function.
In my case the simple example does not work. I think this is due to a mistake in the part of the code where you set the error bar width. This can be solved by removing this part, and adding the following argument when you call the errorbar function:
'LineWidth', errorbar_width, ...
Hope this helps.