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Brain MRI Tumor Detection and Classification

version 1.0.0.0 (462 KB) by Manu BN

Manu BN (view profile)
A Matlab code for Brain MRI Tumor Detection and Classification
4.8
85 Ratings

151 Downloads

Updated 15 Feb 2016

View License

A Matlab code is written to segment the tumor and classify it as Benign or Malignant using SVM.
The features used are DWT+PCA+Statistical+Texture
How to run??
1. Unzip and place the folder Brain_Tumor_Code in the Matlab path and add both the dataset
2. Run BrainMRI_GUI.m and click and select image in the GUI
3. Segment the image and observe the results of classification
4. Evaluate accuracies
The code is loosely based on the paper below (included), please cite and give credit to authors:
[1] Zhang, Yudong, and Lenan Wu. "An MR brain images classifier via principal component analysis and kernel support vector machine." Progress In Electromagnetics Research 130 (2012): 369-388.
Note: Segmentation of skull regions is an ongoing task, will upload a better code once it is over
Comments and suggestions are always welcome

Thanks in advance

Manu B.N

Cite As

Manu BN (2020). Brain MRI Tumor Detection and Classification (https://www.mathworks.com/matlabcentral/fileexchange/55107-brain-mri-tumor-detection-and-classification), MATLAB Central File Exchange. Retrieved .

Comments and Ratings (181)

Venkata Sri Vyshnavi Nerella

Venkata Sri Vyshnavi Nerella (view profile)

sir,please explain the values in meas in trainset file

Nikhil Bambal

Nikhil Bambal (view profile)

Sir can you send the dataset to the mail nikhil.bambal2017@vitstudent.ac.in

Walter Roberson

Walter Roberson (view profile)

Baliji Hope:
svmtrain was part of the Statistics Toolbox up to R2017b and has been replaced bit fitcsvm

https://www.mathworks.com/help/releases/R2017b/stats/svmtrain.html

Akash Paramasivan

Akash Paramasivan (view profile)

sir can you dataset to the mail ash4472@gmail.com

venkata sri vyshnavi nerella

venkata sri vyshnavi nerella (view profile)

Sir, can I get the data set plz

Amit Sharma

Amit Sharma (view profile)

Shuvo Das

Shuvo Das (view profile)

Undefined function or variable 'signal'.

Error in BrainMRI_GUI>pushbutton2_Callback (line 138)
Feat = getmswpfeat(signal,winsize,wininc,J,'matlab');

Error in gui_mainfcn (line 95)
feval(varargin{:});

Error in BrainMRI_GUI (line 46)
gui_mainfcn(gui_State, varargin{:});

Error in
matlab.graphics.internal.figfile.FigFile/read>@(hObject,eventdata)BrainMRI_GUI('pushbutton2_Callback',hObject,eventdata,guidata(hObject))
Error while evaluating UIControl Callback.

please sir help...@Manu BN

venkata sri vyshnavi nerella

venkata sri vyshnavi nerella (view profile)

Sir, pleas explain how it is classifying tumor as benign or malignant.

Balaji Hope

Balaji Hope (view profile)

*******please help with the below error*******
Undefined function or variable 'svmtrain'.

Error in BrainMRI_GUI>pushbutton2_Callback (line 181)
svmStruct1 = svmtrain(xdata,group,'kernel_function', 'linear');

Error in gui_mainfcn (line 95)
feval(varargin{:});

Error in BrainMRI_GUI (line 46)
gui_mainfcn(gui_State, varargin{:});

Error in
matlab.graphics.internal.figfile.FigFile/read>@(hObject,eventdata)BrainMRI_GUI('pushbutton2_Callback',hObject,eventdata,guidata(hObject))
Error while evaluating UIControl Callback

anju sree

anju sree (view profile)

sir,,can i get the dataset plz?? tanujanath79@gmail.com

venkata sri vyshnavi nerella

venkata sri vyshnavi nerella (view profile)

Getting error at line load trainset.mat
Can you explain what the problem is

satish reddy

satish reddy (view profile)

sir please provide me code sir
i am doing main project on this..so could you please provide me code

khloud anwar

khloud anwar (view profile)

Indira Usmanova

Indira Usmanova (view profile)

errors

>> BrainMRI_GUI
'dwt2' requires Wavelet Toolbox.

Error in BrainMRI_GUI>pushbutton2_Callback (line 140)
[cA1,cH1,cV1,cD1] = dwt2(signal1,'db4');

Error in gui_mainfcn (line 95)
feval(varargin{:});

Error in BrainMRI_GUI (line 46)
gui_mainfcn(gui_State, varargin{:});

Error in
matlab.graphics.internal.figfile.FigFile/read>@(hObject,eventdata)BrainMRI_GUI('pushbutton2_Callback',hObject,eventdata,guidata(hObject))
Error while evaluating UIControl Callback.

Ratheesh P M

Ratheesh P M (view profile)

Sir, please, send me the full code and all research paper files to my mail: pmratheeshponmeri@gmail.com

Aari K

Aari K (view profile)

what to do with these errors???

>> BrainMRI_GUI
'dwt2' requires Wavelet Toolbox.

Error in BrainMRI_GUI>pushbutton2_Callback (line 140)
[cA1,cH1,cV1,cD1] = dwt2(signal1,'db4');

Error in gui_mainfcn (line 95)
feval(varargin{:});

Error in BrainMRI_GUI (line 46)
gui_mainfcn(gui_State, varargin{:});

Error in
matlab.graphics.internal.figfile.FigFile/read>@(hObject,eventdata)BrainMRI_GUI('pushbutton2_Callback',hObject,eventdata,guidata(hObject))
Error while evaluating UIControl Callback.

Harsha Thalisetty

Harsha Thalisetty (view profile)

Vinay ReddY

Vinay ReddY (view profile)

Send me thecode
kamireddyvinay9494@gmail.com

Sophia Nelson

Sophia Nelson (view profile)

Jorge Garza-Ulloa

Jorge Garza-Ulloa (view profile)

Please provide me the code and data set at my email id ingarza0@gmail.com. Thanks

Rao Fahad

Rao Fahad (view profile)

Sir plz provide me code and data set at my email id
fahadasad51@gmail.com

Sandhya Dorai

Sandhya Dorai (view profile)

Sir can you please provide me the code n dataset. I need it as a reference for my project.
vtu7971@veltechuniv.edu.in
Thanks in advance!

yang xu

yang xu (view profile)

Sir, can you please provide me the dataset to 13336153845@163.com

mena essam

mena essam (view profile)

Sir, can you please provide me the dataset to menaessamkaram@gmail.com

Dennis Chiang

Dennis Chiang (view profile)

Sir, Can you please send me dataset to Email ID- d36987143@ym.edu.tw. Thank you!!!

Andleeb Akram

Andleeb Akram (view profile)

Sir, can you provide the dataset too? Email Id: arshad.ayesha914@gmail.com

Aswin Satheesan

Aswin Satheesan (view profile)

Sir, could you please send me the dataset to my email id: aswinsatheesan45@gmail.com
Thank you

abbas alvi

abbas alvi (view profile)

Atharva Pise

Atharva Pise (view profile)

sabrine tounsi

sabrine tounsi (view profile)

sabrine tounsi

sabrine tounsi (view profile)

hey Sir could you please tell me how to open trainset.mat??

Shreyasi Nath

Shreyasi Nath (view profile)

Sir,
Can you please send me dataset to Email ID- romiNath2018@gmail.com
Thank you very much

Huixin Zhang

Huixin Zhang (view profile)

Hi Sir, could you please send dataset to emmazhanghx@gmail.com? Thank you very much.

Samad Wali

Samad Wali (view profile)

Sir, can you please send me the data set to my email id- samad.walikhan@outlook.com?
Thanks a lot

Sayed Jobaer

Sayed Jobaer (view profile)

Sayed Jobaer

Sayed Jobaer (view profile)

Sir, please, send me the full code and all research paper files to my mail is: 318058@mail.dhu.edu.cn

Rasool Reddy

Rasool Reddy (view profile)

Hi, how you are create labeling (benign and malignant) in Trainset.mat file.

Anand Singh

Anand Singh (view profile)

Sir, please, send me the full code and all research paper files to my mail is: singh.anand5775@gmail.com

Priyanka Arya

Priyanka Arya (view profile)

Sir, please provide me the data set along with the code to email id- rosearya94@gmail.com.
thankyou.

MURALI E

MURALI E (view profile)

Sir, kindly send the Entire source code for the following Mail id : sai4murali@gmail.com

ESARI KIRAN

ESARI KIRAN (view profile)

Sir...the link that you have given is for SVM. Can you please provide me the code for training and classification of brain tumor using SOM to the following Email-Id : esarikiran75@gmail.com ?

Dhiaa Tagzait

Dhiaa Tagzait (view profile)

no dataset . detection by classification supervise not work for dicom because you need apprentissage for all the patient you put 3 photos and all your work about him thx

Manmohansinh Pardeshi

Manmohansinh Pardeshi (view profile)

Sir, Can you please provide me dataset to Email ID- manmohansinh.pardeshi@walchandsangli.ac.in

Bernice El

Bernice El (view profile)

If you're still working on this project & you're done with yours, I think it would be nice if we share our thoughts about it, & those having problems can get answers.....join this group on WhatsApp https://chat.whatsapp.com/KeQG3T4AQFD8RX5ZLQJgbB

reddivari thriveni

reddivari thriveni (view profile)

Respected Sir,
Can i get the dataset used for the Brain Tumor detection and classification to my mail id triveni.aishu@gmail.com

kusuma d

kusuma d (view profile)

Feyzullah Gulpinar

Feyzullah Gulpinar (view profile)

Rakesh Das

Rakesh Das (view profile)

can I get the datasets used in it.
if, possible kindly send me it in
spool1066@gmail.com

Sujesh Aradhya M D

Sujesh Aradhya M D (view profile)

Niaz Morshed Nayeem

Niaz Morshed Nayeem (view profile)

Sir, can you give me the dataset at nayeemxtreme@live.com if possible?

Syed Zenith Rhyhan

Syed Zenith Rhyhan (view profile)

Sir,Can i get the dataset used for the Brain Tumor detection and classification.Please share at zenith4cse@yahoo.com (if possible)

Rafee Muhammad

Rafee Muhammad (view profile)

kala naveena

kala naveena (view profile)

Dipankar Das

Dipankar Das (view profile)

Sir, It was really helpful for our project. Is it possible that you can provide us with the dataset for this task? It would be an enormous help. If it is possible, please mail it to Email address:dasd639@gmail.com. Thanks anyway, Sir.

Jacqueline Höll

Jacqueline Höll (view profile)

Sir, could you please provide me the dataset. I need it for a project at technical university Munich dealing with Matlab models in biology. My mail address: jacqueline.hoell@tum.de

Best regards,
Jacqueline

hatice tandogru

hatice tandogru (view profile)

SATYASUNDARA

SATYASUNDARA (view profile)

Sir,please provide me dataset to satyasundara123@gmail.com for my research work. i am very very greate full to you

Zee Idrees

Zee Idrees (view profile)

Sir,Can you please provide me dataset to zeeidrees79@gmail.com for my final year project?

Misti Kumra

Misti Kumra (view profile)

Sir,Can you please provide me dataset to samia.cse.cu@gmail.com for my final year project?

Anusha .

Anusha . (view profile)

Anshuman Mohapatra

Anshuman Mohapatra (view profile)

Shawlin Nila

Shawlin Nila (view profile)

Sir,Can you please provide me dataset to ashawlin@gmail.com for my undergrad project? i am badly in need of brain tumor dataset.

sounderajan karthikeyan

sounderajan karthikeyan (view profile)

DIMITRIOS THEODOROPOULOS

DIMITRIOS THEODOROPOULOS (view profile)

What do the values in the meas matrix represent?I cannot understand how are connected with the labels.
And generally is SVM classification as descent as a deep learning CNN trained to detect tumors??

Aadil Kazmi

Aadil Kazmi (view profile)

Good Work...But no Dataset and Fig file...

M ARAVIND REDDY

M ARAVIND REDDY (view profile)

Sir, can you please provide me the dataset to aravindreddyveerati@gmail.com.

vylia

vylia (view profile)

GOPIKA SREE

GOPIKA SREE (view profile)

sir can you provide me the dataset to the mailid:gopika.gopinathannair@gmail.com im a research scholar im in need of brain tumor dataset

Tawhidur Rahman

Tawhidur Rahman (view profile)

type of tuomor and rest of the part not showing up.only segmented image coming.what to do?

mamta meena

mamta meena (view profile)

I an getting following error when I tried to run the code please help me regarding this.
"Error using load
Unable to read file 'Trainset.mat': no such file or directory."

ashwini chavan

ashwini chavan (view profile)

hello, I am getting following errors. can you help me please?

To use 'dwt2', the following product must be licensed, installed, and enabled:
Wavelet Toolbox

Error in BrainMRI_GUI>pushbutton2_Callback (line 140)
[cA1,cH1,cV1,cD1] = dwt2(signal1,'db4');

Error in gui_mainfcn (line 95)
feval(varargin{:});

Error in BrainMRI_GUI (line 46)
gui_mainfcn(gui_State, varargin{:});

Error in
matlab.graphics.internal.figfile.FigFile/read>@(hObject,eventdata)BrainMRI_GUI('pushbutton2_Callback',hObject,eventdata,guidata(hObject))
Error while evaluating UIControl Callback.

Error using svmtrain (line 230)
svmtrain has been removed. Use fitcsvm instead.

Error in BrainMRI_GUI>pushbutton3_Callback (line 226)
svmStruct_RBF = svmtrain(data(train,:),groups(train),'boxconstraint',Inf,'showplot',false,'kernel_function','rbf');

Error in gui_mainfcn (line 95)
feval(varargin{:});

Error in BrainMRI_GUI (line 46)
gui_mainfcn(gui_State, varargin{:});

Error in
matlab.graphics.internal.figfile.FigFile/read>@(hObject,eventdata)BrainMRI_GUI('pushbutton3_Callback',hObject,eventdata,guidata(hObject))
Error while evaluating UIControl Callback.

Error using svmtrain (line 230)
svmtrain has been removed. Use fitcsvm instead.

Error in BrainMRI_GUI>pushbutton3_Callback (line 226)
svmStruct_RBF = svmtrain(data(train,:),groups(train),'boxconstraint',Inf,'showplot',false,'kernel_function','rbf');

Error in gui_mainfcn (line 95)
feval(varargin{:});

Error in BrainMRI_GUI (line 46)
gui_mainfcn(gui_State, varargin{:});

Error in
matlab.graphics.internal.figfile.FigFile/read>@(hObject,eventdata)BrainMRI_GUI('pushbutton3_Callback',hObject,eventdata,guidata(hObject))
Error while evaluating UIControl Callback.

ashwini chavan

ashwini chavan (view profile)

Hello Its not classifying the tumor I am using matlab r2018a version. Waitbar appears and it doesnt end.

Nebil Divay

Nebil Divay (view profile)

SURYANSH BHARDWAJ

SURYANSH BHARDWAJ (view profile)

Sir can you also provide the .fig file ?

Javaid Iqbal

Javaid Iqbal (view profile)

what are the documentation to apply mRMR algorithm and than Extremely randomized on the extracted features?

dhanshree kolage

dhanshree kolage (view profile)

plz send me code @ dhannok74@gmail.com

SantosG

SantosG (view profile)

ravi teja

ravi teja (view profile)

Sir please tell how to open trainset.mat

Neekhil Rajeshwar

Neekhil Rajeshwar (view profile)

Please sir record one video on this file, how to run...... And give us a link to download the video......

ambily c

ambily c (view profile)

Myself, MTech scholar, from Kerala. I am trying to do mini project related to Brain tumor classification. I would like to classify tumor into benign and malinent using PNN classifier. I request you to kindly provide me with the datasets and programming details need to compleate the work "IDENTIFICATION AND CLASSIFICATION OF BRAIN TUMOR MRI IMAGES WITH FEATURE EXTRACTION USING GLCM AND PROBABILISTIC NEURAL NETWORK"

SantosG

SantosG (view profile)

geng p

geng p (view profile)

When I run this code, some error shows in matlab. can you give me the better version of this code? thanks.

??? Undefined function or method 'rms' for input arguments of type 'double'.

Error in ==> BrainMRI_GUI>pushbutton2_Callback at 157
RMS = mean2(rms(G));

Error in ==> gui_mainfcn at 96
feval(varargin{:});

Error in ==> BrainMRI_GUI at 46
gui_mainfcn(gui_State, varargin{:});

Error in ==>
@(hObject,eventdata)BrainMRI_GUI('pushbutton2_Callback',hObject,eventdata,guidata(hObject))

Vania Karami

Vania Karami (view profile)

ver very wonderful, But I have a question: how I can make trainset with meas and label? this file made after image preprocessing?

yoga lakshmi

yoga lakshmi (view profile)

Manasa Bhat

Manasa Bhat (view profile)

Hello sir can you please share the link of the dataset on this mail id -gbmanasa96@gmail.com

Manasa Bhat

Manasa Bhat (view profile)

Shatakshi Jaiswal

Shatakshi Jaiswal (view profile)

Sir, can you provide the dataset too? Email Id: jshatakshi@gmail.com

Sibi K

Sibi K (view profile)

Sir,how to segment the images which shows the Normal tissue also except for Malignant and Benign Tumor tissue when we put the normal brain images and segment it.

Sibi K

Sibi K (view profile)

Sir,how to segment the images which shows the Normal tissue also except for Malignant and Benign Tumor tissue when we put the normal brain images and segment it.

lamiaa

lamiaa (view profile)

please could you send me the link of the database on this email : eng_Lamiaa19@yahoo.com

Prasannajit Dash

Prasannajit Dash (view profile)

alice liow

alice liow (view profile)

@Manu B. N hello sir. may i know how to create the Trainset.mat and Features.mat
plz send me code of that on jiayu_0321@outlook.my
Its urgent. thanks

Pallabi Sharma

Pallabi Sharma (view profile)

@Manu B.N hello sir from the image set how can we get the Trainset.mat file can you please explain me! its very urgent sir

mamta meena

mamta meena (view profile)

Ahmet Gürbüz

Ahmet Gürbüz (view profile)

Where is the dataset

SUSHANT SHEKHAR

SUSHANT SHEKHAR (view profile)

Sir,can you give me the Matlab code which shows the Normal tissue also except for Malignant and Benign Tumor tissue when we put the normal brain images and segment it.

Jeffrey Chen

Jeffrey Chen (view profile)

Dear Author, I would like to use your MRI dataset in my research work. And the copyright should be issued from you (and MATLAB?). The relevant journal paper was submitted to Scientific Reports. Would you please share me the copyright of the MRI data and tell me where I can apply this documents? Thank you very much.

arjun singh budgurjetr

arjun singh budgurjetr (view profile)

hello sir
Dear sir,
I am Arjun budgurjer form manit Bhopal I would like to ask you about this project. you have implemented this project for one image input at a time but I also implement this project for multiple images input at one time. I would like to request to help me to do this project.
thanks and regards

Angel Javier Carrillo Bermejo

Angel Javier Carrillo Bermejo (view profile)

Hello Sir,
I am graduate student , I request you to please share dataset on this email: angeljcarrillo@gmail.com

Ciddu Manisha

Ciddu Manisha (view profile)

thank you so much sir,it was very much useful

Joseph Santos

Joseph Santos (view profile)

ahmed younis

ahmed younis (view profile)

how to run code with gray scale image

Omer Kasim

Omer Kasim (view profile)

G = pca(DWT_feat); in older verison its usage -- G = princomp(DWT_feat);

Anu Garg

Anu Garg (view profile)

Reema A

Reema A (view profile)

Hai Sir,
Could you plz send me the codes for training mat file generation at reemamathew@vjec.ac.in

Vijaya Lakshmi

Vijaya Lakshmi (view profile)

hello sir,

i am pg student , i request you to please share dataset on this email: pulkeshharan@gmail.com

asim ashfaq

asim ashfaq (view profile)

reham targam

reham targam (view profile)

ahmed usama

ahmed usama (view profile)

hey sir , is the training set is the same testing set included in the zip file ?? i am asking where is the training set ? and how i can make the training vector ?

Janee Alam

Janee Alam (view profile)

I want to implement Tumer or No Tumer and then Malignant or Benign Tumor.

if strcmpi(species,'MALIGNANT')
helpdlg(' Cancer Cell Detected ');
disp(' Cancer Cell Detected');
when I replace MALIGNANT with another keyword, it does not changed. Shows MALIGNANT. I have the questions from where MALIGNANT or BENIGN comes from in guide window after running the code? Would you please explain it?

vinutha shetty

vinutha shetty (view profile)

can i get code for svm classification. i have used haralick features vinutha793@gmail.com

Jayesh Thorat

Jayesh Thorat (view profile)

I want to add the classification as Brain Tumor or No Tumor and then Malignant or Benign Tumor.
Can anyone help mi..?

Manu BN

Manu BN (view profile)

@paul: its included as a function
@Kirti: go thro the paper
Thanks to all for the ratings

Bishaljit paul

Bishaljit paul (view profile)

sir i need features codes

Mani Shan

Mani Shan (view profile)

Kirti Mittal

Kirti Mittal (view profile)

Sir can u please provide me an overview of this project and whether applying any other segment technique will increase the accuracy of the project?

kaaviya ram

kaaviya ram (view profile)

hi sir pls help me for classification brain tumor by FN-ANN

kaaviya ram

kaaviya ram (view profile)

suja s

suja s (view profile)

Can you please tell me how to create training vectors.I need to train and classify using SOM and KNN

surbhi pareek

surbhi pareek (view profile)

Mahes N

Mahes N (view profile)

Thank you sir, you do a great job.
This application apply for genetic algorithm in my thesis so how to implement this code and can you give me suggestion.

Bishaljit paul

Bishaljit paul (view profile)

hello sir i am a PG student and doing project on MRI image classification using SVM ..please send codes and procedure my email id bishaljit555@gmail.com

Neffati

Neffati (view profile)

ATIK MAHABUB FUAD

ATIK MAHABUB FUAD (view profile)

THANKS A LOT ........

Timolewn Gounarakis

Timolewn Gounarakis (view profile)

Hello sir!! I am postgraduate student and doing a project on digital image processing with theme "transcent on medical imaging (MRI)". Thank you for help me with your code.

Kavinkumar

Kavinkumar (view profile)

good work

VIPUL SAWAKE

VIPUL SAWAKE (view profile)

hello sir i am pg student and doing project on an analysis of radiology reports by using svm please help me regarding my project.how to run image features and all send me the matlab code vipulsawake@gmail.com

Manu BN

Manu BN (view profile)

@ Paul: Why grayscale ??
thanks for the ratings

Ankit Dey

Ankit Dey (view profile)

i can't find the download link to source code ....please help me and provide the download link
thnk u

Samuel Chandu

Samuel Chandu (view profile)

Boni_Pl

Boni_Pl (view profile)

Nice work.But how to implement this program for gray scale image,kindly help me.

Manu BN

Manu BN (view profile)

You dont have all the necessary tool boxes. So you are getting errors.

Suyog Gupta

Suyog Gupta (view profile)

While running the script in Matlab r2012a classification & features are not available. Does this code run only on r2013 ?? plz help

Aisha Khan

Aisha Khan (view profile)

i am getting the following error please help
i am using matlab 2012

>> load('Trainset.mat')
>> load('Normalized_Features.mat')
>> BrainMRI_GUI
Undefined function 'pca' for input arguments of type 'double'.

Error in BrainMRI_GUI>pushbutton2_Callback (line 145)
G = pca(DWT_feat);

Error in gui_mainfcn (line 96)
feval(varargin{:});

Error in BrainMRI_GUI (line 46)
gui_mainfcn(gui_State, varargin{:});

Error in
@(hObject,eventdata)BrainMRI_GUI('pushbutton2_Callback',hObject,eventdata,guidata(hObject))


Error while evaluating uicontrol Callback

Srabonti Biswas

Srabonti Biswas (view profile)

Manu BN

Manu BN (view profile)

You have to be specific about the question

GOPIKA SREE

GOPIKA SREE (view profile)

two matrix files are there based on what those files are created sir

Manu BN

Manu BN (view profile)

@ gurleen:The syntax for SVM is different in latest versions. Are u using GA to minimize cost function ???
Thanks for the rating.
@ alaa: The paper is included with the code
@sanjeev: use load command

gurleen kaur

gurleen kaur (view profile)

Sir,
will this code only run on 2013a?
and I am working on a Project similar to this i.e. brain tumor detection and classification using genetic algorithm. So can you give me suggestion how can I incorporate GA into this code?

alaa shamasneh

alaa shamasneh (view profile)

thanks a lot for perfect application can you download pdf explination for the code plz

sanjeev kumar

sanjeev kumar (view profile)

@ManuBN sir how to load the dataset that u have donein this project i want to understand that

Muhammad Rashid

Muhammad Rashid (view profile)

thanks

Manu BN

Manu BN (view profile)

@ Shah: Use Matlab 2013, right click on the benign & malignant folders and add them to path
@sandhya: u cant segment by svm, you can classify by svm for sure

sandhya gudise

sandhya gudise (view profile)

hi sir
this is sandhya.can we use SVM for brain tissue segmentation.

jinal shah

jinal shah (view profile)

help me out sir.. ur topic is very interesting and i want to run and understand the code..

i am getthing following error.. help me to rectify it
>> BrainMRI_GUI
Undefined function 'pca' for
input arguments of type
'double'.

Error in
BrainMRI_GUI>pushbutton2_Callback
(line 145)
G = pca(DWT_feat);

Error in gui_mainfcn (line 95)
feval(varargin{:});

Error in BrainMRI_GUI (line 46)
gui_mainfcn(gui_State,
varargin{:});

Error in
@(hObject,eventdata)BrainMRI_GUI('pushbutton2_Callback',hObject,eventdata,guidata(hObject))


Error while evaluating UIControl Callback

>>

abhijit dalavi

abhijit dalavi (view profile)

we are working on similar project 'Brest cancer detection using matlab ' but we are unable to create the Trainset.mat and Features.mat plz help us send me code of that on abhijitdalavi@gmail.com thanks

Manu BN

Manu BN (view profile)

No, I just checked, it classifies correctly. I'm quite sure about that

Siva

Siva (view profile)

Hi Nice work.You have two image data sets Benign and Malignant. But when you run the segmentation, even the images loaded from the benign data set are being classified as Malignant. Can you clarify on this. Thanks for your time ,much appreciated.

Manu BN

Manu BN (view profile)

While evaluating accuracies if u get an error, click on the same button again and again until u get the results. I'm still working on it to fix it fully.

Sajanaji

Sajanaji (view profile)

Hi manu

I just imported train and test matrix into workspace,run gui,then selected segmentation,it gave me segmented image.
then i clicked on RBF accuracy ..
I am getting the following error.same for all other accuracy test.
please help me to solve this .
Error using svmclassify (line 53)
The first input should be a struct generated by SVMTRAIN.

Error in BrainMRI_GUI>pushbutton3_Callback (line 227)
classes2 = svmclassify(svmStruct_RBF,data(test,:),'showplot',false);

Error in gui_mainfcn (line 96)
feval(varargin{:});

Error in BrainMRI_GUI (line 46)
gui_mainfcn(gui_State, varargin{:});

Error in @(hObject,eventdata)BrainMRI_GUI('pushbutton3_Callback',hObject,eventdata,guidata(hObject))


Error while evaluating uicontrol Callback

Manu BN

Manu BN (view profile)

Follow every steps that I have given. Make sure u hav full version of Matlab with all the necessary toolboxes.

sanjeev kumar

sanjeev kumar (view profile)

sir i downloaded the ip file but the gui after loading image is not showing next steps results like segmentation kindly help i m using matlab 2013a

sanjeev kumar

sanjeev kumar (view profile)

sir i am not getting to download the zip file i did the segmentation of tumor by thresholding segmentation please help my net step is classifiaction

Nitsa Judith Herzog

Nitsa Judith Herzog (view profile)

Manu BN

Manu BN (view profile)

The images were given to me by a friend who is a researcher with tumors.

Madan Kumar Y

Madan Kumar Y (view profile)

ok can i know from where did u get the tumor images from... thanks

Manu BN

Manu BN (view profile)

Thanks for the rating, Workout the basic Matlab svm classification example using Fishir Iris dataset. Then you will easily understand it.

Madan Kumar Y

Madan Kumar Y (view profile)

Madan Kumar Y

Madan Kumar Y (view profile)

i understood the code till the glcm part... but in the svm classification part where u loaded the training data and used....
xdata = meas;
group = label;
svmStruct1 = svmtrain(xdata,group,'kernel_function', 'linear');
species = svmclassify(svmStruct1,feat,'showplot',false);

if strcmpi(species,'MALIGNANT').

i tried to get this part so much but wasn't able to get. just by string comparing with species(which is of the svm classify), how are u able to classify into benign and malignant, i din get. plsbrief me, thanks.

Manu BN

Manu BN (view profile)

@madan: Benign are non cancerous cells, just a lump of abnormal cells. Malignant are cancerous cells which are known to be elastic in nature. So the texture of both of these will be totally different. Naked eyes cant tell the difference. Go thro articles about GLCm features for texture. Workout Matlab basic examples on it to get more insight into it.
@Afshin: thanks for the rating.

afshin shoeibi

afshin shoeibi (view profile)

Madan Kumar Y

Madan Kumar Y (view profile)

can i know on what basis is the tumors classified?? what's the criteria for benign and malignant classification from the homogeneity,energy, correlation, kurtosis, idm etc. i didn't get the svm classification of it. can u please help me in it?? thanks

Manu BN

Manu BN (view profile)

@ Sandhya: Its 3 level decomposition. Perform feature scaling and mean normalization for both test and train data. Add more features to the existing ones. These two steps mean that u have to do the entire project again!!!! Max of 2-3 days.

sandhya gudise

sandhya gudise (view profile)

sir
for all kernels around 80% accuracy is a obtained.is it a single level wavelet decomposition.how can these accuracies can be increased. please help me sir.

Shridhar Kamalapurkar

Shridhar Kamalapurkar (view profile)

Sir i am using only 4 texture features(contrast, correlation, energy and homogeneity) for classification. I think 20 images is not enough for training, can i get more classified images.

Osama Abbas

Osama Abbas (view profile)

I made something different for brain tumor detection depending on solidity of the image. it's also good, but not as good as this

sandhya gudise

sandhya gudise (view profile)

Manu BN

Manu BN (view profile)

20 images are used for training each type. Plz rate the project if you find it useful for your academic work.

sandhya gudise

sandhya gudise (view profile)

sir how many images are used for trainning

Manu BN

Manu BN (view profile)

It is already included in zip file

neima enad

neima enad (view profile)

please can send mri database of brain tumor that have variants type of maligants and bengins thanks

Manu BN

Manu BN (view profile)

I just ran the code but not getting the errors you mentioned. I'm quite sure you are making some mistake. Use Matlab 2013 or higher versions.
156 downloads in 15 days but no one got the errors you are saying.

sandhya gudise

sandhya gudise (view profile)

sir its good.but i am getting some errors like
Error using svmclassify (line 53)
The first input should be a struct generated by SVMTRAIN.

Error in BrainMRI_GUI>pushbutton2_Callback (line 182)
species = svmclassify(svmStruct1,feat,'showplot',false);

Error in gui_mainfcn (line 96)
feval(varargin{:});

Error in BrainMRI_GUI (line 46)
gui_mainfcn(gui_State, varargin{:});

Error in
@(hObject,eventdata)BrainMRI_GUI('pushbutton2_Callback',hObject,eventdata,guidata(hObject))


Error while evaluating uicontrol Callback

can you please help me

Ahmed Donkol

Ahmed Donkol (view profile)

Manu BN

Manu BN (view profile)

Now check , I have used the normal zip files.

Ayani Kapugama Arachchi

Ayani Kapugama Arachchi (view profile)

Hi,
I tried. Still the same issue. Can you please upload the file without .zipx format? really big favor

Manu BN

Manu BN (view profile)

Use the latest version of winzip. The file is in .zipx format . only a latest winzip can open it.

Ayani Kapugama Arachchi

Ayani Kapugama Arachchi (view profile)

Hi..

Can you please upload the MATLAB program ?
This ZIP file isn't working

split range

split range (view profile)

Manu BN

Manu BN (view profile)

@Mia plz download the zip file, code is there in it

MIA ZEBOUCHI

MIA ZEBOUCHI (view profile)

I NEED THE PROGRAMME MATLAB OF THE DETECTION OF THE TUMOR BRAIN

Updates

1.0.0.0

.Zip files are added as zipx was found incompatible for many people.
MATLAB Release Compatibility
Created with R2013a
Compatible with any release
Platform Compatibility
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Brain_Tumor/Brain_Tumor_Code/