Brain MRI Tumor Detection and Classification
A Matlab code is written to segment the tumor and classify it as Benign or Malignant using SVM.
The features used are DWT+PCA+Statistical+Texture
How to run??
1. Unzip and place the folder Brain_Tumor_Code in the Matlab path and add both the dataset
2. Run BrainMRI_GUI.m and click and select image in the GUI
3. Segment the image and observe the results of classification
4. Evaluate accuracies
The code is loosely based on the paper below (included), please cite and give credit to authors:
[1] Zhang, Yudong, and Lenan Wu. "An MR brain images classifier via principal component analysis and kernel support vector machine." Progress In Electromagnetics Research 130 (2012): 369-388.
Note: Segmentation of skull regions is an ongoing task, will upload a better code once it is over
Comments and suggestions are always welcome
Thanks in advance
Manu B.N
Cite As
Manu BN (2021). Brain MRI Tumor Detection and Classification (https://www.mathworks.com/matlabcentral/fileexchange/55107-brain-mri-tumor-detection-and-classification), MATLAB Central File Exchange. Retrieved .
Comments and Ratings (192)
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- Science, Engineering and Industry > Sciences > Neuroscience > Human Brain Mapping > MRI >
- Signal Processing > Wavelet >
- AI, Data Science, and Statistics > Statistics and Machine Learning > Dimensionality Reduction and Feature Extraction >
- Science, Engineering and Industry > Sciences > Physics > Medical Physics >
- Science, Engineering and Industry > Sciences > Biological and Health Sciences > Biomedical Imaging > MRI >
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Hello.
load Trainset.mat has two file. one of these meas and label.
When I see meas files. I saw 20*13 matrix. what is the meaning. Why the file is 20*13 matrix. What does 20*13 mean
Electrical Electronics Engineer
Mail:furkandemir1180@gmail.com
sir please send the code to janglumarkam12@gmail.com
sir please send the code to ukumardas9@gmail.com
I want the code plz
my email : anas0yos@hotmail.com
Sir Can You Please provide me the code and data set at my email id nijumathew23@gmail.com. Thanks
Can you please provide the dataset along with the code to - puneet.saran2018@vitstudent.ac.in
I loved the topic - An Automatic Classification Of Brain Tumors through MRI Using Support Vector Machine as my research topic. if u
don't mind can you please pass me the final reports and presentation slides related to this work. it can
be really useful for my research work. my email address is nijumathew23@gmail.com
Can you provide me dataset, please? utpoldasrmstu@gmail.com
Sir, please provide me the data set along with the code to email id- wanghuiju10@gmail.com.
thankyou.
how can i resolve issue given below . i also have to face same errors in code can you help me to solve these errors
sir,please explain the values in meas in trainset file
Sir can you send the dataset to the mail nikhil.bambal2017@vitstudent.ac.in
Baliji Hope:
svmtrain was part of the Statistics Toolbox up to R2017b and has been replaced bit fitcsvm
https://www.mathworks.com/help/releases/R2017b/stats/svmtrain.html
sir can you dataset to the mail ash4472@gmail.com
Sir, can I get the data set plz
Undefined function or variable 'signal'.
Error in BrainMRI_GUI>pushbutton2_Callback (line 138)
Feat = getmswpfeat(signal,winsize,wininc,J,'matlab');
Error in gui_mainfcn (line 95)
feval(varargin{:});
Error in BrainMRI_GUI (line 46)
gui_mainfcn(gui_State, varargin{:});
Error in
matlab.graphics.internal.figfile.FigFile/read>@(hObject,eventdata)BrainMRI_GUI('pushbutton2_Callback',hObject,eventdata,guidata(hObject))
Error while evaluating UIControl Callback.
please sir help...@Manu BN
Sir, pleas explain how it is classifying tumor as benign or malignant.
*******please help with the below error*******
Undefined function or variable 'svmtrain'.
Error in BrainMRI_GUI>pushbutton2_Callback (line 181)
svmStruct1 = svmtrain(xdata,group,'kernel_function', 'linear');
Error in gui_mainfcn (line 95)
feval(varargin{:});
Error in BrainMRI_GUI (line 46)
gui_mainfcn(gui_State, varargin{:});
Error in
matlab.graphics.internal.figfile.FigFile/read>@(hObject,eventdata)BrainMRI_GUI('pushbutton2_Callback',hObject,eventdata,guidata(hObject))
Error while evaluating UIControl Callback
sir,,can i get the dataset plz?? tanujanath79@gmail.com
Getting error at line load trainset.mat
Can you explain what the problem is
sir please provide me code sir
i am doing main project on this..so could you please provide me code
errors
>> BrainMRI_GUI
'dwt2' requires Wavelet Toolbox.
Error in BrainMRI_GUI>pushbutton2_Callback (line 140)
[cA1,cH1,cV1,cD1] = dwt2(signal1,'db4');
Error in gui_mainfcn (line 95)
feval(varargin{:});
Error in BrainMRI_GUI (line 46)
gui_mainfcn(gui_State, varargin{:});
Error in
matlab.graphics.internal.figfile.FigFile/read>@(hObject,eventdata)BrainMRI_GUI('pushbutton2_Callback',hObject,eventdata,guidata(hObject))
Error while evaluating UIControl Callback.
Sir, please, send me the full code and all research paper files to my mail: pmratheeshponmeri@gmail.com
what to do with these errors???
>> BrainMRI_GUI
'dwt2' requires Wavelet Toolbox.
Error in BrainMRI_GUI>pushbutton2_Callback (line 140)
[cA1,cH1,cV1,cD1] = dwt2(signal1,'db4');
Error in gui_mainfcn (line 95)
feval(varargin{:});
Error in BrainMRI_GUI (line 46)
gui_mainfcn(gui_State, varargin{:});
Error in
matlab.graphics.internal.figfile.FigFile/read>@(hObject,eventdata)BrainMRI_GUI('pushbutton2_Callback',hObject,eventdata,guidata(hObject))
Error while evaluating UIControl Callback.
Send me thecode
kamireddyvinay9494@gmail.com
Please provide me the code and data set at my email id ingarza0@gmail.com. Thanks
Sir plz provide me code and data set at my email id
fahadasad51@gmail.com
Sir can you please provide me the code n dataset. I need it as a reference for my project.
vtu7971@veltechuniv.edu.in
Thanks in advance!
Sir, can you please provide me the dataset to 13336153845@163.com
Sir, can you please provide me the dataset to menaessamkaram@gmail.com
Sir, Can you please send me dataset to Email ID- d36987143@ym.edu.tw. Thank you!!!
Sir, can you provide the dataset too? Email Id: arshad.ayesha914@gmail.com
Sir, could you please send me the dataset to my email id: aswinsatheesan45@gmail.com
Thank you
hey Sir could you please tell me how to open trainset.mat??
Sir,
Can you please send me dataset to Email ID- romiNath2018@gmail.com
Thank you very much
Hi Sir, could you please send dataset to emmazhanghx@gmail.com? Thank you very much.
Sir, can you please send me the data set to my email id- samad.walikhan@outlook.com?
Thanks a lot
Sir, please, send me the full code and all research paper files to my mail is: 318058@mail.dhu.edu.cn
Hi, how you are create labeling (benign and malignant) in Trainset.mat file.
Sir, please, send me the full code and all research paper files to my mail is: singh.anand5775@gmail.com
Sir, please provide me the data set along with the code to email id- rosearya94@gmail.com.
thankyou.
Sir, kindly send the Entire source code for the following Mail id : sai4murali@gmail.com
Sir...the link that you have given is for SVM. Can you please provide me the code for training and classification of brain tumor using SOM to the following Email-Id : esarikiran75@gmail.com ?
no dataset . detection by classification supervise not work for dicom because you need apprentissage for all the patient you put 3 photos and all your work about him thx
Sir, Can you please provide me dataset to Email ID- manmohansinh.pardeshi@walchandsangli.ac.in
If you're still working on this project & you're done with yours, I think it would be nice if we share our thoughts about it, & those having problems can get answers.....join this group on WhatsApp https://chat.whatsapp.com/KeQG3T4AQFD8RX5ZLQJgbB
Respected Sir,
Can i get the dataset used for the Brain Tumor detection and classification to my mail id triveni.aishu@gmail.com
can I get the datasets used in it.
if, possible kindly send me it in
spool1066@gmail.com
Sir, can you give me the dataset at nayeemxtreme@live.com if possible?
Sir,Can i get the dataset used for the Brain Tumor detection and classification.Please share at zenith4cse@yahoo.com (if possible)
Sir, It was really helpful for our project. Is it possible that you can provide us with the dataset for this task? It would be an enormous help. If it is possible, please mail it to Email address:dasd639@gmail.com. Thanks anyway, Sir.
Sir, could you please provide me the dataset. I need it for a project at technical university Munich dealing with Matlab models in biology. My mail address: jacqueline.hoell@tum.de
Best regards,
Jacqueline
Sir,please provide me dataset to satyasundara123@gmail.com for my research work. i am very very greate full to you
Sir,Can you please provide me dataset to zeeidrees79@gmail.com for my final year project?
Sir,Can you please provide me dataset to samia.cse.cu@gmail.com for my final year project?
Sir,Can you please provide me dataset to ashawlin@gmail.com for my undergrad project? i am badly in need of brain tumor dataset.
What do the values in the meas matrix represent?I cannot understand how are connected with the labels.
And generally is SVM classification as descent as a deep learning CNN trained to detect tumors??
Good Work...But no Dataset and Fig file...
Sir, can you please provide me the dataset to aravindreddyveerati@gmail.com.
sir can you provide me the dataset to the mailid:gopika.gopinathannair@gmail.com im a research scholar im in need of brain tumor dataset
type of tuomor and rest of the part not showing up.only segmented image coming.what to do?
I an getting following error when I tried to run the code please help me regarding this.
"Error using load
Unable to read file 'Trainset.mat': no such file or directory."
hello, I am getting following errors. can you help me please?
To use 'dwt2', the following product must be licensed, installed, and enabled:
Wavelet Toolbox
Error in BrainMRI_GUI>pushbutton2_Callback (line 140)
[cA1,cH1,cV1,cD1] = dwt2(signal1,'db4');
Error in gui_mainfcn (line 95)
feval(varargin{:});
Error in BrainMRI_GUI (line 46)
gui_mainfcn(gui_State, varargin{:});
Error in
matlab.graphics.internal.figfile.FigFile/read>@(hObject,eventdata)BrainMRI_GUI('pushbutton2_Callback',hObject,eventdata,guidata(hObject))
Error while evaluating UIControl Callback.
Error using svmtrain (line 230)
svmtrain has been removed. Use fitcsvm instead.
Error in BrainMRI_GUI>pushbutton3_Callback (line 226)
svmStruct_RBF = svmtrain(data(train,:),groups(train),'boxconstraint',Inf,'showplot',false,'kernel_function','rbf');
Error in gui_mainfcn (line 95)
feval(varargin{:});
Error in BrainMRI_GUI (line 46)
gui_mainfcn(gui_State, varargin{:});
Error in
matlab.graphics.internal.figfile.FigFile/read>@(hObject,eventdata)BrainMRI_GUI('pushbutton3_Callback',hObject,eventdata,guidata(hObject))
Error while evaluating UIControl Callback.
Error using svmtrain (line 230)
svmtrain has been removed. Use fitcsvm instead.
Error in BrainMRI_GUI>pushbutton3_Callback (line 226)
svmStruct_RBF = svmtrain(data(train,:),groups(train),'boxconstraint',Inf,'showplot',false,'kernel_function','rbf');
Error in gui_mainfcn (line 95)
feval(varargin{:});
Error in BrainMRI_GUI (line 46)
gui_mainfcn(gui_State, varargin{:});
Error in
matlab.graphics.internal.figfile.FigFile/read>@(hObject,eventdata)BrainMRI_GUI('pushbutton3_Callback',hObject,eventdata,guidata(hObject))
Error while evaluating UIControl Callback.
Hello Its not classifying the tumor I am using matlab r2018a version. Waitbar appears and it doesnt end.
Sir can you also provide the .fig file ?
what are the documentation to apply mRMR algorithm and than Extremely randomized on the extracted features?
plz send me code @ dhannok74@gmail.com
Sir please tell how to open trainset.mat
Please sir record one video on this file, how to run...... And give us a link to download the video......
Myself, MTech scholar, from Kerala. I am trying to do mini project related to Brain tumor classification. I would like to classify tumor into benign and malinent using PNN classifier. I request you to kindly provide me with the datasets and programming details need to compleate the work "IDENTIFICATION AND CLASSIFICATION OF BRAIN TUMOR MRI IMAGES WITH FEATURE EXTRACTION USING GLCM AND PROBABILISTIC NEURAL NETWORK"
When I run this code, some error shows in matlab. can you give me the better version of this code? thanks.
??? Undefined function or method 'rms' for input arguments of type 'double'.
Error in ==> BrainMRI_GUI>pushbutton2_Callback at 157
RMS = mean2(rms(G));
Error in ==> gui_mainfcn at 96
feval(varargin{:});
Error in ==> BrainMRI_GUI at 46
gui_mainfcn(gui_State, varargin{:});
Error in ==>
@(hObject,eventdata)BrainMRI_GUI('pushbutton2_Callback',hObject,eventdata,guidata(hObject))
ver very wonderful, But I have a question: how I can make trainset with meas and label? this file made after image preprocessing?
Hello sir can you please share the link of the dataset on this mail id -gbmanasa96@gmail.com
Sir, can you provide the dataset too? Email Id: jshatakshi@gmail.com
Sir,how to segment the images which shows the Normal tissue also except for Malignant and Benign Tumor tissue when we put the normal brain images and segment it.
Sir,how to segment the images which shows the Normal tissue also except for Malignant and Benign Tumor tissue when we put the normal brain images and segment it.
please could you send me the link of the database on this email : eng_Lamiaa19@yahoo.com
@Manu B. N hello sir. may i know how to create the Trainset.mat and Features.mat
plz send me code of that on jiayu_0321@outlook.my
Its urgent. thanks
@Manu B.N hello sir from the image set how can we get the Trainset.mat file can you please explain me! its very urgent sir
Where is the dataset
Sir,can you give me the Matlab code which shows the Normal tissue also except for Malignant and Benign Tumor tissue when we put the normal brain images and segment it.
Dear Author, I would like to use your MRI dataset in my research work. And the copyright should be issued from you (and MATLAB?). The relevant journal paper was submitted to Scientific Reports. Would you please share me the copyright of the MRI data and tell me where I can apply this documents? Thank you very much.
hello sir
Dear sir,
I am Arjun budgurjer form manit Bhopal I would like to ask you about this project. you have implemented this project for one image input at a time but I also implement this project for multiple images input at one time. I would like to request to help me to do this project.
thanks and regards
Hello Sir,
I am graduate student , I request you to please share dataset on this email: angeljcarrillo@gmail.com
thank you so much sir,it was very much useful
how to run code with gray scale image
G = pca(DWT_feat); in older verison its usage -- G = princomp(DWT_feat);
Hai Sir,
Could you plz send me the codes for training mat file generation at reemamathew@vjec.ac.in
hello sir,
i am pg student , i request you to please share dataset on this email: pulkeshharan@gmail.com
hey sir , is the training set is the same testing set included in the zip file ?? i am asking where is the training set ? and how i can make the training vector ?
I want to implement Tumer or No Tumer and then Malignant or Benign Tumor.
if strcmpi(species,'MALIGNANT')
helpdlg(' Cancer Cell Detected ');
disp(' Cancer Cell Detected');
when I replace MALIGNANT with another keyword, it does not changed. Shows MALIGNANT. I have the questions from where MALIGNANT or BENIGN comes from in guide window after running the code? Would you please explain it?
can i get code for svm classification. i have used haralick features vinutha793@gmail.com
I want to add the classification as Brain Tumor or No Tumor and then Malignant or Benign Tumor.
Can anyone help mi..?
@paul: its included as a function
@Kirti: go thro the paper
Thanks to all for the ratings
sir i need features codes
Sir can u please provide me an overview of this project and whether applying any other segment technique will increase the accuracy of the project?
hi sir pls help me for classification brain tumor by FN-ANN
Can you please tell me how to create training vectors.I need to train and classify using SOM and KNN
Thank you sir, you do a great job.
This application apply for genetic algorithm in my thesis so how to implement this code and can you give me suggestion.
hello sir i am a PG student and doing project on MRI image classification using SVM ..please send codes and procedure my email id bishaljit555@gmail.com
THANKS A LOT ........
Hello sir!! I am postgraduate student and doing a project on digital image processing with theme "transcent on medical imaging (MRI)". Thank you for help me with your code.
good work
hello sir i am pg student and doing project on an analysis of radiology reports by using svm please help me regarding my project.how to run image features and all send me the matlab code vipulsawake@gmail.com
@ Paul: Why grayscale ??
thanks for the ratings
i can't find the download link to source code ....please help me and provide the download link
thnk u
Nice work.But how to implement this program for gray scale image,kindly help me.
You dont have all the necessary tool boxes. So you are getting errors.
While running the script in Matlab r2012a classification & features are not available. Does this code run only on r2013 ?? plz help
i am getting the following error please help
i am using matlab 2012
>> load('Trainset.mat')
>> load('Normalized_Features.mat')
>> BrainMRI_GUI
Undefined function 'pca' for input arguments of type 'double'.
Error in BrainMRI_GUI>pushbutton2_Callback (line 145)
G = pca(DWT_feat);
Error in gui_mainfcn (line 96)
feval(varargin{:});
Error in BrainMRI_GUI (line 46)
gui_mainfcn(gui_State, varargin{:});
Error in
@(hObject,eventdata)BrainMRI_GUI('pushbutton2_Callback',hObject,eventdata,guidata(hObject))
Error while evaluating uicontrol Callback
You have to be specific about the question
two matrix files are there based on what those files are created sir
@ gurleen:The syntax for SVM is different in latest versions. Are u using GA to minimize cost function ???
Thanks for the rating.
@ alaa: The paper is included with the code
@sanjeev: use load command
Sir,
will this code only run on 2013a?
and I am working on a Project similar to this i.e. brain tumor detection and classification using genetic algorithm. So can you give me suggestion how can I incorporate GA into this code?
thanks a lot for perfect application can you download pdf explination for the code plz
@ManuBN sir how to load the dataset that u have donein this project i want to understand that
thanks
@ Shah: Use Matlab 2013, right click on the benign & malignant folders and add them to path
@sandhya: u cant segment by svm, you can classify by svm for sure
hi sir
this is sandhya.can we use SVM for brain tissue segmentation.
help me out sir.. ur topic is very interesting and i want to run and understand the code..
i am getthing following error.. help me to rectify it
>> BrainMRI_GUI
Undefined function 'pca' for
input arguments of type
'double'.
Error in
BrainMRI_GUI>pushbutton2_Callback
(line 145)
G = pca(DWT_feat);
Error in gui_mainfcn (line 95)
feval(varargin{:});
Error in BrainMRI_GUI (line 46)
gui_mainfcn(gui_State,
varargin{:});
Error in
@(hObject,eventdata)BrainMRI_GUI('pushbutton2_Callback',hObject,eventdata,guidata(hObject))
Error while evaluating UIControl Callback
>>
we are working on similar project 'Brest cancer detection using matlab ' but we are unable to create the Trainset.mat and Features.mat plz help us send me code of that on abhijitdalavi@gmail.com thanks
No, I just checked, it classifies correctly. I'm quite sure about that
Hi Nice work.You have two image data sets Benign and Malignant. But when you run the segmentation, even the images loaded from the benign data set are being classified as Malignant. Can you clarify on this. Thanks for your time ,much appreciated.
While evaluating accuracies if u get an error, click on the same button again and again until u get the results. I'm still working on it to fix it fully.
Hi manu
I just imported train and test matrix into workspace,run gui,then selected segmentation,it gave me segmented image.
then i clicked on RBF accuracy ..
I am getting the following error.same for all other accuracy test.
please help me to solve this .
Error using svmclassify (line 53)
The first input should be a struct generated by SVMTRAIN.
Error in BrainMRI_GUI>pushbutton3_Callback (line 227)
classes2 = svmclassify(svmStruct_RBF,data(test,:),'showplot',false);
Error in gui_mainfcn (line 96)
feval(varargin{:});
Error in BrainMRI_GUI (line 46)
gui_mainfcn(gui_State, varargin{:});
Error in @(hObject,eventdata)BrainMRI_GUI('pushbutton3_Callback',hObject,eventdata,guidata(hObject))
Error while evaluating uicontrol Callback
Follow every steps that I have given. Make sure u hav full version of Matlab with all the necessary toolboxes.
sir i downloaded the ip file but the gui after loading image is not showing next steps results like segmentation kindly help i m using matlab 2013a
sir i am not getting to download the zip file i did the segmentation of tumor by thresholding segmentation please help my net step is classifiaction
The images were given to me by a friend who is a researcher with tumors.
ok can i know from where did u get the tumor images from... thanks
Thanks for the rating, Workout the basic Matlab svm classification example using Fishir Iris dataset. Then you will easily understand it.
i understood the code till the glcm part... but in the svm classification part where u loaded the training data and used....
xdata = meas;
group = label;
svmStruct1 = svmtrain(xdata,group,'kernel_function', 'linear');
species = svmclassify(svmStruct1,feat,'showplot',false);
if strcmpi(species,'MALIGNANT').
i tried to get this part so much but wasn't able to get. just by string comparing with species(which is of the svm classify), how are u able to classify into benign and malignant, i din get. plsbrief me, thanks.
@madan: Benign are non cancerous cells, just a lump of abnormal cells. Malignant are cancerous cells which are known to be elastic in nature. So the texture of both of these will be totally different. Naked eyes cant tell the difference. Go thro articles about GLCm features for texture. Workout Matlab basic examples on it to get more insight into it.
@Afshin: thanks for the rating.
can i know on what basis is the tumors classified?? what's the criteria for benign and malignant classification from the homogeneity,energy, correlation, kurtosis, idm etc. i didn't get the svm classification of it. can u please help me in it?? thanks
@ Sandhya: Its 3 level decomposition. Perform feature scaling and mean normalization for both test and train data. Add more features to the existing ones. These two steps mean that u have to do the entire project again!!!! Max of 2-3 days.
sir
for all kernels around 80% accuracy is a obtained.is it a single level wavelet decomposition.how can these accuracies can be increased. please help me sir.
Sir i am using only 4 texture features(contrast, correlation, energy and homogeneity) for classification. I think 20 images is not enough for training, can i get more classified images.
I made something different for brain tumor detection depending on solidity of the image. it's also good, but not as good as this
20 images are used for training each type. Plz rate the project if you find it useful for your academic work.
sir how many images are used for trainning
It is already included in zip file
please can send mri database of brain tumor that have variants type of maligants and bengins thanks
I just ran the code but not getting the errors you mentioned. I'm quite sure you are making some mistake. Use Matlab 2013 or higher versions.
156 downloads in 15 days but no one got the errors you are saying.
sir its good.but i am getting some errors like
Error using svmclassify (line 53)
The first input should be a struct generated by SVMTRAIN.
Error in BrainMRI_GUI>pushbutton2_Callback (line 182)
species = svmclassify(svmStruct1,feat,'showplot',false);
Error in gui_mainfcn (line 96)
feval(varargin{:});
Error in BrainMRI_GUI (line 46)
gui_mainfcn(gui_State, varargin{:});
Error in
@(hObject,eventdata)BrainMRI_GUI('pushbutton2_Callback',hObject,eventdata,guidata(hObject))
Error while evaluating uicontrol Callback
can you please help me
Now check , I have used the normal zip files.
Hi,
I tried. Still the same issue. Can you please upload the file without .zipx format? really big favor
Use the latest version of winzip. The file is in .zipx format . only a latest winzip can open it.
Hi..
Can you please upload the MATLAB program ?
This ZIP file isn't working
@Mia plz download the zip file, code is there in it
I NEED THE PROGRAMME MATLAB OF THE DETECTION OF THE TUMOR BRAIN