PATMA: Parser of archival TMA

Version 1.0.2.1 (843 KB) by lroszkowiak
The PATMA automatically finds and extracts cores from archival images of the TMA.
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Updated 14 Nov 2016

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The PATMA (Parser of archival TMA) software is capable of automatically finding and extracting cores from archival images of the tissue microarrays. Tissue microarray slides are often scanned to perform computer-aided histopathological analysis of the tissue cores. For processing the image, splitting the whole virtual slide into images of individual cores is required. This software aids the scientists who want to perform further image processing on single cores.
<Reference>
Roszkowiak and Lopez (2016), PATMA: parser of archival tissue microarray. PeerJ 4:e2741; DOI: 10.7717/peerj.2741

Cite As

lroszkowiak (2024). PATMA: Parser of archival TMA (https://www.mathworks.com/matlabcentral/fileexchange/60131-patma-parser-of-archival-tma), MATLAB Central File Exchange. Retrieved .

MATLAB Release Compatibility
Created with R2015b
Compatible with any release
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PATMA/

Version Published Release Notes
1.0.2.1

Ver. 1.0.2
• Added JPEG2000 read capability.
• Added extraction file format selection menu.
• Added image rotation option.
• Updated punch numbering method.
Ver. 1.0.2.1
• Added reference to published article
1.0.2.0