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FAIR stands for Flexible Algorithms for Image Registration and is a MATLAB (https://de.mathworks.com/) written package for solving the so-called image registration problem (alas co-registration, correspondence, fusion, matching, optical flow, warping, ...).
A solid documentation is the book by Modersitzki: FAIR - Flexible Algorithms for Image Registration, SIAM 2009.
Cite As
Jan Modersitzki (2024). C4IR/FAIR.m (https://github.com/C4IR/FAIR.m), GitHub. Retrieved .
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add-ons/FAIRFEM
- ArmijoDiffeomorphicFEM.m
- contents
- elasticFEM
- FAIRplotsFEM.m
- FEMobjFctn
- FEMPIREobjFctn
- getDeterminant
- getGradientMatrixFEM
- hyperElasticFEM
- MLIRFEM.m
- plotTriMesh
- volTetraGrid
add-ons/FAIRFEM/examples
- EFEM_CompareTriangulations2D.m
- EFEM_FEMPIRE_Gaussian2D.m
- EFEM_FEMPIRE_Mice3D.m
- EFEM_Hands2DMLIRFEM.m
- EFEM_Nodal_vs_FEM2D.m
- EFEM_SSDvsMP.m
add-ons/FAIRFEM/meshes
add-ons/LagLDDMM
- contents
- dctn
- diffusionCC
- eigLaplacian
- GaussNewtonLDDMM
- getLinearInterGridMatrix
- getLinearInterMatrix
- getPICMatrixAnalyticIntegral
- getTrafoFromInstationaryVelocityRK4
- getTrafoFromVelocityRK4
- getVelocityStartingGuess
- idctn
- LDDMMobjFctn
- linearInterGrid
- mbCurvatureST
- mbDiffusionST
- mbDiffusionST
- mfCurvatureST
- mfDiffusionST
- MLLDDMM
- MPLDDMMobjFctn.m
- solveSpectral
- spectralPrecondPCG
- testLagLDDMM.m
add-ons/LagLDDMM/examples
- contents
- ELDDMM_2Ddisc2C_mbCurvatureST.m
- ELDDMM_2Ddisc2C_mbDiffusionCC.m
- ELDDMM_2Ddisc2C_mbDiffusionST.m
- ELDDMM_2Ddisc2C_mfCurvatureST.m
- ELDDMM_2Ddisc2C_mfDiffusionCC.m
- ELDDMM_2Ddisc2C_mfDiffusionST.m
- ELDDMM_2Dhands_mfDiffusionCC.m
- ELDDMM_Precond_diffusionCC.m
- ELDDMM_Precond_diffusionST.m
- EMPLDDMM_2DGaussian_mfDiffusionCC.m
- EMPLDDMM_2DGaussian_mfDiffusionST.m
- EMPLDDMM_3Dmouse_mfDiffusionCC.m
- EMPLDDMM_3Dmouse_mfDiffusionST.m
- Ex_HyperElasticNIREP.m
- Ex_LDDMMNIREP.m
- setupNIREPDataNA02.m
- setupNIREPDataNA03.m
- setupNIREPDataNA04.m
- setupNIREPDataNA05.m
- setupNIREPDataNA06.m
add-ons/VAMPIRE
add-ons/VAMPIRE/examples
- EV_2DGaussianNoise_VAMPIRE.m
- EV_2DGaussian_VAMPIRE.m
- EV_2DGaussian_VAMPIRE_MLPIR.m
- EV_3Dmouse_VAMPIRE.m
- EV_3Dmouse_VAMPIRE_MLPIR.m
kernel
kernel/data
- checkDataFile.m
- contents
- jpgs2data
- setup2Ddisc2CData.m
- setup2DGaussianData.m
- setup2DhandData.m
- setup2DHNSPData.m
- setup2DMRIData.m
- setup2DPETCTData.m
- setup2DUSData.m
- setup3DboxData.m
- setup3DbrainData.m
- setup3DkneeData.m
- setup3DmouseData.m
- testData.m
kernel/distances
- contents
- distance
- MI
- MImex
- MIspline
- NCC
- NCCmex
- NGF
- NGFcross
- NGFdot
- NGFmex
- parseDistance
- rhoSpline
- SSD
- SSDmex
- testDistances.m
kernel/examples
- bizarr.m
- contents
- E2_setup2DhandData.m
- E2_setup3DbrainData.m
- E2_viewImage2D.m
- E2_viewImage3D.m
- E3_1D_basics.m
- E3_1D_derivatives.m
- E3_1D_scale.m
- E3_2D_basics.m
- E3_2D_derivative.m
- E3_2D_generic.m
- E3_2D_scale.m
- E3_bsplines.m
- E3_checkDerivative.m
- E3_getCellCenteredGrid.m
- E3_Hands_ij2xy.m
- E3_ij2xy3d.m
- E3_interpolation2D.m
- E3_linearInterpolation1D.m
- E3_linearInterpolation2D.m
- E3_matlabInterpolation1D.m
- E3_MS_splineInterpolation1D
- E3_MS_splineInterpolation2D.m
- E3_MS_splineInterpolation2Dext.m
- E3_multilevel.m
- E3_splineInterpolation1D.m
- E3_splineInterpolation2D.m
- E3_truncatedSplineInterpolation1D.m
- E3_US_getMultilevel.m
- E4_Affine2D.m
- E4_Affine2Dplain.m
- E4_Bizarr.m
- E4_Rigid2D.m
- E4_Rigid2Dplain.m
- E4_SplineTransformation2D.m
- E4_Translation2D.m
- E4_US_rotation.m
- E4_US_trafo.m
- E4_US_trafos.m
- E5_2D_affine.m
- E5_2D_quadratic.m
- E5_2D_TPS.m
- E5_Hands_TPS.m
- E5_linear.m
- E5_quadratic.m
- E5_TPS.m
- E6_3Dbrain_MLPIR_sparse.m
- E6_FAIRplots.m
- E6_Hands_affine.m
- E6_Hands_MLPIR.m
- E6_Hands_PIR_GN.m
- E6_Hands_PIR_Nesterov.m
- E6_Hands_PIR_SD.m
- E6_HNSP_MLPIR_reg.m
- E6_HNSP_MLPIR_SSD_affine2D.m
- E6_HNSP_MLPIR_SSD_rigid2D.m
- E6_HNSP_MLPIR_SSD_rotation2D.m
- E6_HNSP_PIR_GN.m
- E6_HNSP_PIR_NelderMead.m
- E6_HNSP_PIR_scale.m
- E6_HNSP_PIR_SSD_affine2D_level5.m
- E6_HNSP_PIR_SSD_rigid2D_level4.m
- E6_HNSP_PIR_SSD_rigid2D_level7.m
- E6_HNSP_PIR_SSD_rotation2D_level4.m
- E6_HNSP_PIR_SSD_rotation2D_level7.m
- E6_HNSP_PIR_SSD_spline2D_level5.m
- E6_HNSP_RPIR.m
- E6_HNSP_SSD_rotation2D_level4.m
- E6_HNSP_SSD_rotation2D_level8.m
- E6_HNSP_SSD_translation2D_level4.m
- E6_HNSP_SSD_translation2D_level4_spline.m
- E6_HNSP_SSD_translation2D_level8.m
- E6_HNSP_SSD_translation2D_level8_spline.m
- E6_PETCT_MLPIR.m
- E6_quadrature_Gaussian2D.m
- E6_quadrature_Spline1D.m
- E6_quadrature_Spline2D.m
- E6_quadrature_SSD2D.m
- E7
- E7_basic.m
- E7_extended.m
- E7_Hands_distance_rotation.m
- E7_Hands_distance_rotation_ext.m
- E7_Hands_SSDvsRotation.m
- E7_histogram1D.m
- E7_histogram1D_ext.m
- E7_HNSP_SSD_forces.m
- E7_PETCT_MIvsRotation.m
- E7_PETCT_MLPIR.m
- E7_PETCT_MLPIR_ext.m
- E7_PETCT_SSDvsRotation.m
- E7_SSDforces.m
- E7_US_MIvsRotation.m
- E8_curvature.m
- E8_elastic.m
- E8_forcesCurvature.m
- E8_forcesElastic.m
- E8_regularizationElasticMB.m
- E8_regularizationElasticMF.m
- E8_RegularizationHyperElasticMB.m
- E8_RegularizationHyperElasticMF.m
- E9_3Dbrain_GN.m
- E9_3Dbrain_lBFGS.m
- E9_3Dbrain_TR.m
- E9_Hands_MLIR_SSD_mbCurv.m
- E9_Hands_MLIR_SSD_mbElas.m
- E9_Hands_MLIR_SSD_mbElasFEM.m
- E9_Hands_MLIR_SSD_mfCurv.m
- E9_Hands_MLIR_SSD_mfElas.m
- E9_Hands_MLIR_wSSD_mfElas.m
- E9_Hands_MSIR.m
- E9_Hands_NPIR.m
- E9_Hands_NPIRmb_GN.m
- E9_Hands_NPIRmf_GN.m
- E9_Hands_NPIRmf_TR_nopre.m
- E9_Hands_NPIRmf_TR_pcg.m
- E9_Hands_NPIR_MI_mbElas_BFGS.m
- E9_Hands_NPIR_OPT.m
- E9_Hands_NPIR_pre.m
- E9_HNSP_MLIR_SSD_mbCurv.m
- E9_HNSP_MLIR_SSD_mbElas.m
- E9_HNSP_MLIR_SSD_mfCurv.m
- E9_HNSP_MLIR_SSD_mfElas.m
- E9_HNSP_MLIR_TR.m
- E9_HNSP_NPIR.m
- E9_HNSP_NPIR_pre.m
- E9_MRIhead_MLIRlBFGS_MI_mfElas.m
- E9_MRIhead_MLIRlBFGS_NGF_mbElas.m
- E9_MRIhead_MLIR_MI_mbElas.m
- E9_MRIhead_MLIR_NGF_mbElas.m
- E9_MRIhead_MLIR_SSD_mbElas.m
- E9_PETCT_MLIRlBFGS_MI_mbCurv.m
- E9_PETCT_MLIRlBFGS_MI_mbElas.m
- E9_PETCT_MLIRlBFGS_MI_mfCurv.m
- E9_PETCT_MLIRlBFGS_MI_mfElas.m
- E9_PETCT_MLIRlBFGS_NGF_mbCurv.m
- E9_PETCT_MLIRlBFGS_NGF_mbElas.m
- E9_PETCT_MLIR_NGF_mbCurv.m
- E9_PETCT_MLIR_NGF_mbElas.m
- E9_PETCT_MLIR_NGF_mfCurv.m
- E9_PETCT_MLIR_NGF_mfElas.m
- Ehyper_2Ddisc2C_MB.m
- Ehyper_3Dbrain_MF.m
- P5_LM.m
- spline1D
- testExamples.m
kernel/imgModels
- contents
- getSplineCoefficients.m
- imgModel
- linearInter.m
- linearInterMatlab
- linearInterMex
- linearInterSmooth.m
- linearInterSmoothMex.m
- motherSpline
- nnInter.m
- nnInterMex
- splineInter
- splineInterMex.m
- testImgModels.m
- testOneImgModel
kernel/landmarks
kernel/matrixfree
kernel/numerics
- Armijo
- ArmijoDiffeomorphic.m
- center
- checkDerivative
- contents
- GaussNewton
- getCellCenteredGrid
- getMultilevel
- getNodalGrid
- getStaggeredGrid
- grid2grid
- lBFGS
- MLIR
- MLPIR
- Nesterov
- nodal2center
- NPIRBFGSobjFctn
- NPIRobjFctn.m
- NPIRobjFctnFEM.m
- optPara
- PIRBFGSobjFctn
- PIRobjFctn
- solveLinearSystem
- SteepestDescent
- stg2center
- testNumerics.m
- TrustRegion
kernel/regularizers
- contents.m
- curvature
- elastic
- elasticFEM
- elasticNodal
- geometry
- getCurvatureMatrix
- getElasticMatrixNodal
- getElasticMatrixStg
- getGradientNodal
- hyperElastic
- regularizer
- testRegularizers.m
kernel/tools
- contents
- dealOptions
- FAIRcell2struct
- FAIRcheckFiles
- FAIRcheckFolder
- FAIRinput
- FAIRmake
- FAIRmessage
- FAIRpause
- FAIRtestPara
- FAIRwrite
- reportStatus.m
- sdiag
- setBreakpoint
- testEnd
- testFAIR.m
- testStart.m
- testTools.m
kernel/transformations
- affine2D
- affine2Dsparse
- affine3D
- affine3Dsparse
- contents
- matVecQw
- rigid2D
- rigid2Dsparse
- rigid3D
- rigid3Dsparse
- rotation2D
- splineTransformation2D
- splineTransformation2Dsparse
- splineTransformation3Dsparse
- testOneTransformation
- testTransformations.m
- trafo
- translation2D
- translation3D
kernel/viewers
Versions that use the GitHub default branch cannot be downloaded
Version | Published | Release Notes | |
---|---|---|---|
3.0.0.0 |
|
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