iddoweiner/Coding-Sequence-optimization-for-Chlamydomonas-reinhardtii

Coding Sequence optimization for Chlamydomonas reinhardtii

https://github.com/iddoweiner/Coding-Sequence-optimization-for-Chlamydomonas-reinhardtii

Version 2.0.0.0 (3.4 MB)
94 Downloads
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30 Mar 2018

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This program provides an implementation for carrying out the sequence optimization described in:
'Enhancing Heterologous Expression in C. reinhardtii by Transcript Sequence Optimization'
Weiner et al., The Plant Journal, 2018
This is a standalone application for optimizing DNA sequences meant for achieving high expression in Chlamydomonas reinhardtii (the MATLAB source code is available too).
The fascinating Chlamydomonas picture used as this app's logo was taken by Gerd Guenther:
(https://www.allposters.com/-st/Gerd-Guenther-Posters_c180530_.htm)

Cite As

Iddo Weiner (2026). iddoweiner/Coding-Sequence-optimization-for-Chlamydomonas-reinhardtii (https://github.com/iddoweiner/Coding-Sequence-optimization-for-Chlamydomonas-reinhardtii), GitHub. Retrieved .

Categories

Find more on Genomics and Next Generation Sequencing in Help Center and MATLAB Answers

General Information

MATLAB Release Compatibility

  • Compatible with any release

Platform Compatibility

  • Windows
  • macOS
  • Linux
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Version Published Release Notes
2.0.0.0

We improved the GUI
I added an .exe file for installing a GUI that conveniently runs our optimization algorithm "behind the scenes" and returns the optimized sequence.
This file is located in the linked Github repository.
highlighted the availability of the source code
Find both source code and a GUI to run it in the linked Github repository
We also added the MATLAB source code for the convenience of MATLAB users
1.0.0.0

To view or report issues in this GitHub add-on, visit the GitHub Repository.
To view or report issues in this GitHub add-on, visit the GitHub Repository.