HDXfit
HDXfit is a package for fitting the site exchange probabilities to peptide mass envelopes from hydrogen/deuterium exchange of a protein
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The package HDXfit contains scripts for fitting the site exchange probabilities to mass envelopes of the peptides produced in a hydrogen/deuterium exchange experiment. The method was introduced in: Kan,Walters, Mayne, Englander, Proc. Nat. Acad. Sci. U.S.A. (2013) 110, 16438-16443, doi:10.1073/pnas.1315532110. HDXfit package is designed to perform the fitting in a more efficient and better controlled way. The underlying theory and the algorithms, as well as the results from simulations, are reported in the paper D. Babic, S, Kazazic, D. M. Smith, Resolution of protein H/D exchange by fitting amide exchange probabilities to the peptide isotopic envelopes, Rapid Commun. Mass Sp. accepted for publication (http://dx.doi.org/10.1002/rcm.8460).
Cite As
Darko Babic (2026). HDXfit (https://www.mathworks.com/matlabcentral/fileexchange/69415-hdxfit), MATLAB Central File Exchange. Retrieved .
General Information
- Version 1.0.2.1 (44.3 KB)
MATLAB Release Compatibility
- Compatible with any release
Platform Compatibility
- Windows
- macOS
- Linux
| Version | Published | Release Notes | Action |
|---|---|---|---|
| 1.0.2.1 | The reference where the method was published, is updated. |
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| 1.0.2 | README.txt was not recognized and displayed. It is now under the heading Examples, in the file hdxfit.html. The preview displays only the head; to read it, open in the separate tab or download. |
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| 1.0.1 | README.txt was not recognized and displayed at first. It is now in the file hdxfit.html. |
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| 1.0.0 |
