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CanlabCore

version 1.0.0 (510 MB) by Tor Wager
Core tools required for running Canlab Matlab toolboxes. The heart of this toolbox is object-oriented tools that enable interactive analysis

149 Downloads

Updated 08 Dec 2021

From GitHub

View license on GitHub

This repository contains core tools for MRI/fMRI/PET analysis from the Cognitive and Affective Neuorscience Lab (Tor Wager, PI) and our collaborators. The tools provide a high-level language for interacting with neuroimaging data. The idea is to take preprocessed data or even the results of single-subject analyses—the output of established preprocessing pipelines—and import them into lightweight, flexible data objects specialized for neuroimaging visualization and analysis. These objects allow for interactive analysis with simple commands, like “plot”, “predict”, and “montage”. The repository also includes other useful toolboxes, including fMRI design optimization using a genetic algorithm, fMRI HRF estimation, fMRI analysis with Hierarchical Exponentially Weighted Moving Average change-point analysis, various fMRI diagnostics, and miscellaneous other tools and functions for visualizing brain data.

Cite As

Tor Wager (2021). CanlabCore (https://github.com/canlab/CanlabCore), GitHub. Retrieved .

MATLAB Release Compatibility
Created with R2019b
Compatible with any release
Platform Compatibility
Windows macOS Linux

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CanlabCore

CanlabCore/@atlas

CanlabCore/@brainpathway

CanlabCore/@brainpathway/private

CanlabCore/@brainpathway_multisubject

CanlabCore/@canlab_dataset

CanlabCore/@fmri_data

CanlabCore/@fmri_glm_design_matrix

CanlabCore/@fmri_mask_image

CanlabCore/@fmri_timeseries

CanlabCore/@fmridisplay

CanlabCore/@image_vector

CanlabCore/@predictive_model

CanlabCore/@region

CanlabCore/@statistic_image

CanlabCore/Cifti_plotting

CanlabCore/Cluster_contig_region_tools

CanlabCore/Cluster_contig_region_tools/Cluster-based_multivar_tools

CanlabCore/Cluster_contig_region_tools/Cluster_based_statistics

CanlabCore/Cluster_contig_region_tools/cluster_tool

CanlabCore/Data_extraction

CanlabCore/Data_extraction/Grandfathered

CanlabCore/Data_extraction/read_gzip_nii

CanlabCore/Data_processing_tools

CanlabCore/External/2019_03_03_BCT

CanlabCore/External/2019_03_03_BCT/data_and_demos

CanlabCore/External/BF

CanlabCore/External/boundedline

CanlabCore/External/boundedline/Inpaint_nans

CanlabCore/External/boundedline/Inpaint_nans/demo

CanlabCore/External/boundedline/Inpaint_nans/doc

CanlabCore/External/boundedline/Inpaint_nans/test

CanlabCore/External/boundedline/boundedline

CanlabCore/External/boundedline/catuneven

CanlabCore/External/boundedline/singlepatch

CanlabCore/External/circularGraph

CanlabCore/External/export_fig

CanlabCore/External/lasso

CanlabCore/External/lasso/tests

CanlabCore/External/matlab_bgl

CanlabCore/External/matlab_bgl/@inplace

CanlabCore/External/matlab_bgl/@ipdouble

CanlabCore/External/matlab_bgl/@ipint32

CanlabCore/External/matlab_bgl/custom

CanlabCore/External/matlab_bgl/doc

CanlabCore/External/matlab_bgl/examples

CanlabCore/External/matlab_bgl/private

CanlabCore/External/matlab_bgl/test

CanlabCore/External/spider

CanlabCore/External/spider/Optimization

CanlabCore/External/spider/Optimization/leon_src

CanlabCore/External/spider/Optimization/libsvm

CanlabCore/External/spider/Optimization/libsvm_classifier_spider

CanlabCore/External/spider/Optimization/libsvm_one_class_spider

CanlabCore/External/spider/Optimization/libsvm_regressor_spider

CanlabCore/External/spider/basic/@algorithm

CanlabCore/External/spider/basic/@chain

CanlabCore/External/spider/basic/@cv

CanlabCore/External/spider/basic/@data

CanlabCore/External/spider/basic/@data_global

CanlabCore/External/spider/basic/@distance

CanlabCore/External/spider/basic/@get_mean

CanlabCore/External/spider/basic/@group

CanlabCore/External/spider/basic/@kernel

CanlabCore/External/spider/basic/@loss

CanlabCore/External/spider/basic/@map

CanlabCore/External/spider/basic/@normalize

CanlabCore/External/spider/basic/@param

CanlabCore/External/spider/basic/@spiral

CanlabCore/External/spider/basic/@toy

CanlabCore/External/spider/basic/@toy2d

CanlabCore/External/spider/basic/@toyreg

CanlabCore/External/spider/clust/@kmeans

CanlabCore/External/spider/clust/@kpca

CanlabCore/External/spider/clust/@kvq

CanlabCore/External/spider/clust/@one_class_svm

CanlabCore/External/spider/density/@bayes

CanlabCore/External/spider/density/@gauss

CanlabCore/External/spider/density/@parzen

CanlabCore/External/spider/feat_sel/@rfe

CanlabCore/External/spider/functions

CanlabCore/External/spider/mclass/@one_vs_one

CanlabCore/External/spider/mclass/@one_vs_rest

CanlabCore/External/spider/mod_sel/@bayessel

CanlabCore/External/spider/mod_sel/@gridsel

CanlabCore/External/spider/pat/@adaboost

CanlabCore/External/spider/pat/@bagging

CanlabCore/External/spider/pat/@knn

CanlabCore/External/spider/pat/@platt

CanlabCore/External/spider/pat/@svm

CanlabCore/External/spider/pat/@template

CanlabCore/External/spider/redset/@rss_mp

CanlabCore/External/spider/reg/@gproc

CanlabCore/External/spider/reg/@multi_reg

CanlabCore/External/spider/reg/@multi_rr

CanlabCore/External/spider/reg/@svr

CanlabCore/External/umap/umap

CanlabCore/External/umap/util