scGEAToolbox (single-cell Gene Expression Analysis Toolbox)

Version 24.6.5 (239 MB) by James Cai
Single-cell Gene Expression Analysis Toolbox
5.0
(2)
1.2K Downloads
Updated 3 Oct 2024
View License on GitHub

Cite As

Cai JJ. scGEAToolbox: a Matlab toolbox for single-cell RNA sequencing data analysis. Bioinformatics. 2019 Nov 7:btz830. doi: 10.1093/bioinformatics/btz830. PMID: 31697351.

MATLAB Release Compatibility
Created with R2024b
Compatible with any release
Platform Compatibility
Windows macOS Linux
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+gui

+gui/@SplashScreen

+gui/private

+pkg

+pkg/private

+run

+run/external/R_SeuratSaveRds

+run/external/R_clustermole

+run/external/mt_CCPE

+run/external/mt_CSN_transform

+run/external/mt_ComBat

+run/external/mt_DESeq2

+run/external/mt_GENIE3

+run/external/mt_GENIE3/RT

+run/external/mt_HCP

+run/external/mt_MAGIC

+run/external/mt_McImpute/+mcimpute

+run/external/mt_PHATE

+run/external/mt_SC3/ClusterPack

+run/external/mt_SIMLR

+run/external/mt_SIMLR/src

+run/external/mt_SNNDPC

+run/external/mt_SinNLRR

+run/external/mt_SoptSC

+run/external/mt_SoptSC/NNDSVD

+run/external/mt_SoptSC/symnmf2

+run/external/mt_SoptSC/vinlinplot

+run/external/mt_Specter

+run/external/mt_Specter/LSC

+run/external/mt_Specter/dimred

+run/external/mt_Specter/utils

+run/external/mt_TSEE

+run/external/mt_UMAP44

+run/external/mt_UMAP44/util

+run/external/mt_cbrewer

+run/external/mt_scGeneFit

+run/external/mt_scGeneFit/source

+run/external/mt_scGeneFit/source/classification_metrics

+run/external/py_SERGIO

+run/external/py_harmonypy

+run/external/web_STRING/stringdb

+run/private

+run/thirdparty/MPPC

+run/thirdparty/alona_panglaodb

+run/thirdparty/alona_panglaodb/msigdb_c8

+run/thirdparty/alona_subtypes

+run/thirdparty/k-NN-code

+run/thirdparty/locfit/Source

+run/thirdparty/locfit/m

+ten

+ten/+xct

@SingleCellExperiment

private

resources/HPA_Single_Cell_Type_Atlas

tensor_toolbox

tensor_toolbox/@ktensor

tensor_toolbox/@tenmat

tensor_toolbox/@tensor