TNMR GUI

A GUI for visualizing and analyzing TNMR 1-D data sets.

Simulation of sodium NMR

Simulation of sodium NMR sequences using density operator evolution

Matlab code for simulation of sodium NMR - v02.01Simulation of sodium NMR sequences using density operators, superoperators, evolution under Liouvillians, and irreducible tensors decomposition. This

Covariance NMR Toolbox

A collection of MATLAB functions implementing common covariance NMR processing methods

Covariance NMR toolbox, version 1.1 (C) (2010) David A. Snyder(1) along with Timothy Short(1), Leigh Alzapiedi(1) and Rafael Bruschweiler (2)(1) Department of Chemistry, College of Science and Health

RBNMR

Read, plot and handle Bruker NMR-data

Read and plot NMR-data: rbnmr.m and plotbnmr.mThese matlab functions makes it easy to read Bruker format processed NMR data into the workspace memory of matlab and to plot the data. It supports one

NMR Data Processing and Analysis

10 simple examples to show how to import, visualize, and process 1D, 2D, and 3D NMR data, including error correction and peak fitting.

1. Import and plot Bruker DataWe begin by reading a 1H Bruker NMR data into MATLAB structures. A structure array is a data type that groups related data using data containers called fields. In this

Wavelet Scale Spectra

Compute wavelet scale spectra from segmented discrete wavelet transform (Screenshot).

NMR properties

Returns NMR properties of the isotopes

Returns NMR properties of the isotopesEXAMPLEH = isotopes('1H'), T = isotopes('3H'), or if the atomic mass is not specified, i.e. I = isotopes('H'), the function returns array of structures with data

2D NMR Simulation Tools

Routines to simulate 2D NMR spectra

Routines to simulate apodized, in phase (or anti-phase) 2D Nuclear Magnetic Resonance (NMR) spectra given chemical shifts, linewidths and a matrix of correlations between chemical shifts. A routine

TEnvR: Toolbox for Environmental Research

Codes for data from UV-VIS, fluorescence, and NMR spectroscopies, ultrahigh resolution mass spectrometry, and for statistical analysis.

Yuan-Yu/bioStructureM

A basic matlab toolkit for analysis protein structure

Gmr.m (NMR & MRI Properties)

Provides gyromagnetic ratio and other NMR properties for nuclei

GMR returns the gyromagnetic ratio and other NMR properties for various nuclei as well as the electron. Besides the function format, the command format will work as well, e.g. "gmr Na23 hzpt

QMAS_NMR_spectrum_analyzer

calculates and approximates 2nd-order Quadrupolar MAS NMR spectra and helps to find out their parameters

Define structural information from 2-nd order quadrupolar MAS NMR spectrum.By approximation an experimental spectrum the program can calculate such parameters as:- number of quadrupolar lines

2D NMR spectra fitter

A set of functions that can be used for approximation of various 2D NMR spectra with 2D Gaussians.

2D NMR spectra fitter, version 1.0, 2015Ali Shaban (1), Sevastyan O. Rabdano (1,2)(1)Department of Physics, Saint Petersburg State University, Russia;(2)Laboratory of Biomolecular NMR, Saint

IRtools

MATLAB package of iterative regularization methods and large-scale test problems; see also https://arxiv.org/abs/1712.05602.

pGJB

pGKB

ProcessNetwork/ProcessNetwork_Software

Functions for the delineation of Dynamical Process Networks using Information Theory

spin echo simulation

NMR, 90,180 deg rotations

http://simulations.narod.ru/This spin echo simulation in matlab. Blue is magnetic filed, red is spins. This is NMR effect. first applied signal that rotate spins at 90 degrees then after pause at

tsread

Read Bruker TopSpin NMR parameter files

First order coupling diagram

Makes good looking coupling diagrams for NMR-spectroscopy.

This app draws coupling diagrams and a simulated (1H) NMR spectrum.

slepian_zero

MATLAB functions with a more or less strictly educational value in geophysics

AnalyseTOCSYbyNMF

Non-negative matrix factorization of 2D NMR spectra

Non-negative matrix factorization (NMF or NNMF) of TOCSY or STOCSY NMR spectra, building upon the method described in Snyder, David A., et al. "Non-negative matrix factorization of two-dimensional

Spin dynamics simulation - Spinach library

Simulation of NMR, EPR, DNP, MRI, and other types of magnetic resonance spectroscopy.

supports NMR (nuclear magnetic resonance), ESR (electron spin resonance), MRI (magnetic resonance imaging), and other forms of Magnetic resonance spectroscopy. For each specific experiment, Spinach is

Complex Exponential Analysis

Noise and decomposition algorithms for complex exponentials.

Algorithms for the preprocessing and analysis of NMR signals and other complex exponentials. Including:- Cadzow's signal enhancement- Kumaresan-Tufts decomposition- HSVD Decomposition- HTLS

Non-linear stacking of signals

Stacking repeated records can improve the SNR of seismic, geo-radar, or NMR signals. Three methods of non-linear stacking are implemented.

Diffusion Kurtosis Imaging estimator

Diffusion tensor and parameters estimation from the DWI data, based on Tabesh et al. (2011)

Newton-Raphson Method

Newton-Raphson Method to find Real Root of Functions

indefinite math error, once the denominator is zero. The formula of the NMR is: x = x0 -(f(x0)/f'(x0)). It is my first MATLAB code. After getting the number of iterations and the root itself, the code plots a

icoshift - interval correlation optimized shifting (for MATLAB V. 2014b and above)

An advanced tool for dealing with & solving signal misalignment in all kind of spectra-like datasets

The icoshift tool for Matlab is an open source and highly efficient program specifically designed for solving signal alignment problems in metabonomic NMR data analysis, but it can also properly deal

Stacked Plot

Stacked plots display spectra with time or another parameter. Five methods are provided.

Stacked plots are commonly seen in NMR spectroscopy. They often illustrate the evolution of spectra with time or some other parameter. There are several (somewhat equivalent) methods to produce such

Bloch Equation Vector Diagram Simulation Toolbox

Two functions that carry out pulses and evolution time periods for an array of spins.

1D Damped MUSIC (DMUSIC) Algorithm

This is the implementation of the DMUSIC algorithm and an example

This is the implementation of the 1D DMUSIC algorithm from:[1] Y. Li, J. Razavilar, and K. Liu, "A Super-Resolution Parameter Estimation Algorithm for Multi- Dimensional NMR Spectroscopy," University

Wigner rotations of 2nd rank spherical tensor

This function will rotate a 2nd rank spherical tensor between different coordinate systems.

NMR and Polymers. Schmidt-Rohr & spiess. Academic press 1994

Normalized Mean Square Error

Normalized Mean Square Error of an Image

Evaluate the Normalized Mean Square Error (NMRS) of an image as a metric of the denoising effectiveness and image structure/detail preservation during filtering.NMSE would represent how the filtered

Hysteresis thresholding for 3D images (or 2D)

Segments images based dual thresholding with 2D or 3D connectivity neighborhoods.

to segment a kidney region, please refer to the supplement in QSM of kidney inflammation and fibrosis, NMR Biomed, 2013 Dec;26(12):1853-63 (http://onlinelibrary.wiley.com/doi/10.1002/nbm.3039/abstract

Nuclear magnetic resonance simulation

In classics approximation

Find Core Toolbox, version 2.0

MATLAB implementation of the FindCore and FindCore2 algorithms

CoRe-CMAP Toolkit

Software implementing the CoRe-CMAP model for predicting protein flexibility

Multi-FindCore Toolbox

Extends FindCore Toolbox to cluster a set of structural models and superimpose each cluster

NLCSmoothReg

Computes a smooth regularized solution of an ill-posed discrete linear inverse problem.

from solid-state NMR data." Macromolecules 2005, Vol. 38, Issue 20, 8372-8380).

Gradient Echo (GRE) background phase removal using 'projection onto dipole fields' method

An algorithm to remove background field in MRI Gradient Echo (GRE) phase data

for MRI using projection onto dipole fields (PDF). NMR Biomedicine. "For optimal image quality in susceptibility-weighted imaging and accurate quantification of susceptibility, it is necessary to

qMRLab

Quantitative Magnetic Resonance Imaging Made Easy with qMRLab: Use GUI or CLI to fit and simulate a myriad of qMRI models.

. Correlations of quantitative MRI metrics with myelin basic protein (MBP) staining in a murine model of demyelination. NMR in Biomed 2019Kim et al. Rapid framework for quantitative magnetization transfer imaging

Clustering of Ligand Diffusion Coefficient Pairs (CoLD-CoP) Toolbox

Analyze paired DOSY spectra to identify ligands binding macromolecules

xODNP

Calculate hydration dynamics parameters using ODNP data

Zeffiro Forward and Inverse Interface for Complex Geometries

Interface for using finite elements in inverse problems with complex domains

[FreeSurfer](https://surfer.nmr.mgh.harvard.edu/) software suite (Copyright © FreeSurfer, 2013). ZI allows importing a parcellation created with FreeSurfer to enabledistinguishing different brain regions and, thereby, analysing the sub-cortical

Fixed MATLAB 2016a msvc2013 mexopt files

The original files are full of bugs; with the submitted ones mex starts at least

I'm a C++ guy and new to Matlab (though I'm very familiar with R and similar tools). Some of my friends wanted to do analysis of NMR spectra using Matlab, so I downloaded the demo and tried to create

brainSurfer

MATLAB toolbox for visualizing brain data on surfaces.